barSeed - Barley Seed Development Database

Probe CUST_11488_PI390587928

Source Contig U35_26092

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11488_PI390587928	Hv_44K_v2	ATCTTCCACACATGCTAGTGCTGAGCAATTCCGGTTGAGAAGGGTTTCAGCAAAAGATCA	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375532	1684	2e-24	384 - 443	100	60 / 60	plus	ABC14386
MLOC	MLOC_4430.7	691	2e-24	215 - 274	100	60 / 60	minus	ABC14386
MLOC	MLOC_4430.6	1634	2e-24	1158 - 1217	100	60 / 60	minus	ABC14386
MLOC	MLOC_4430.5	1793	2e-24	1317 - 1376	100	60 / 60	minus	ABC14386
MLOC	MLOC_4430.2	2359	2e-24	1883 - 1942	100	60 / 60	minus	ABC14386
MLOC	MLOC_4430.1	1784	2e-24	1311 - 1370	100	60 / 60	minus	ABC14386
JLOC1	JLOC1_2757.3	2411	8e-25	418 - 477	100	60 / 60	plus
JLOC1	JLOC1_2757.1	1786	8e-25	418 - 477	100	60 / 60	plus
Harvest21	ABC23709	629	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_26092	629	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_26092 629 Hv_44K_v2
GCGAGAATGGCGGCGCTCCTCTTACTCCGAAGCTGGCGGCCGGCGGCGCGGTTGCAAGGT
TGCAGCATCCGTACGCCGGCCTAGCCACCGCGGCATCGAGGCAGGACGCTCTAGACGCTA
CCCGCGAGGAGAGCGGGCAGCCGGACAAGGGAAACAAGAACCGTTGGATGGAGCTCCCAC
CGTTCGCGCCGGTCGATGCGGCCGCCGCTGCGAGAGCCATTTTTCGTGGGCAGGGAGGAG
ATGAGATAGAAGGGAGCTCCAACTCCACCGCCATCAGATGGGTCCGGCGATGCTGCCCCG
ACCTGCCGGCCTCGCTGGTGCAGAAGCTCTTCCGCCTCCGCAAGGTTAAGAAGAATGCTG
TGACTGCTGAGACATCTTCCACACATGCTAGTGCTGAGCAATTCCGGTTGAGAAGGGTTT
CAGCAAAAGATCACCTACTGCCTGGTGATACCCTCTTTCTACCTGTTAATAGACAAAAAT
GTTCTGTGGCTGAGAAGGCCAAGAAATGTGATAACAGGAATGAGATTGATGTTTTACGTA
GCCTTGGGAATGATAAGGATAAAGCCATTATTGTGGTTAACAAACCCCCTGGAATGCCAG
TTCAAGGTGGTGTTGGCATAAAAAACAGT

Homology of Contig U35_26092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g01620.2	449	5e-65	protein\|RNA pseudouridine synthase, putative, expressed
Brachypodium v1_2	Bradi4g08187.1	466	2e-86
Arabidopsis v10	None