barSeed - Barley Seed Development Database

Probe CUST_11463_PI390587928

Source Contig U35_38088

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11463_PI390587928	Hv_44K_v2	AGAAGTCACCAAAGATATTACAAAGGTATTCAAAGCAAGGCGTCTTGCAAACATGAGGAT	415	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.412	1.393	1.180	0.811	0.340	0.362
Raw	164.259	255.797	187.780	208.814	29.535	33.938

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72643.1	1254	7e-23	356 - 415	98	59 / 60	minus	None
JLOC1	JLOC1_48325.1	1185	4e-23	731 - 790	98	59 / 60	plus
Harvest21	ABC33914	646	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_38088	646	3e-25	416 - 475	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_38088 646 Hv_44K_v2
GCAAAAATGAAGGAAGATATATACGTTCAGCCATTGTATTTGTTTCTACTTGCAGGACAT
GCCAATATTTGGACTTTGTGTTGCAAGAGCTTGGTCGACCTGCTGTTTCTTTGCACTCTC
ACAAGGCTCAGTCACAAAGGCTTTCAGCGTTGCATCGTTTTAAGTCTGGTCAGGTCCCCG
TCTTGATTGCTACCGATGTGGCCAGTCGTGGGTTGGATATCCAAACTGTTGATCTTGTTA
TCAACTATGACATTCCAAGGTTCCCACGTGATTATATCCATAGGGTTGGGCGAACTGCAA
GAGCTACCAGGGCAGGGCTCTCAATAAGCTTTGTGACCCAGAGGGATATATGTCTCTTAC
ATGAGATAGAAGATGACGTGGGATATCGGTTTGGTGCATACGAGTGCGACGACAAAGAAG
TCACCAAAGATATTACAAAGGTATTCAAAGCAAGGCGTCTTGCAAACATGAGGATGGCGG
ATGAGGGCCACGAAGACAAGGTCCAAGACAGGAAAGACCAGAAGAAGAGAGACCAGGCGA
GAAAGCGCAAACACGAGGAGTGAAGCGAACCTGGCTAGAGATGGCTCATGCTTTACGACT
TGCTTTGTGGACCNGAGTGTGCCCCGTTGCAGACACCGGGCAGTCA

Homology of Contig U35_38088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43980.1	502	3e-74	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g20340.1	500	2e-91
Arabidopsis v10	None