barSeed - Barley Seed Development Database

Probe CUST_11462_PI390587928

Source Contig U35_38090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11462_PI390587928	Hv_44K_v2	CTGCAATTAGTACCTCATGTTGGTTATGTCAGCCTTTTCCCATTCATGATGGGGGCCATT	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61073.2	2907	2e-24	627 - 686	100	60 / 60	minus	None
MLOC	MLOC_61073.1	2970	2e-24	686 - 745	100	60 / 60	minus	None
JLOC1	JLOC1_39878.4	3194	8e-25	2211 - 2270	100	60 / 60	plus
JLOC1	JLOC1_39878.3	3205	8e-25	2222 - 2281	100	60 / 60	plus
JLOC1	JLOC1_39878.2	2955	8e-25	1972 - 2031	100	60 / 60	plus
JLOC1	JLOC1_39878.1	2850	8e-25	1867 - 1926	100	60 / 60	plus
Harvest21	ABC33916	591	5e-23	15 - 73	98	59 / 60	plus
Harvest35	U35_38090	591	5e-23	15 - 73	98	59 / 60	plus

Contig Sequence (591 bp)

>U35_38090 591 Hv_44K_v2
GAGAAGCCCCGCAGCTGCAATTAGTACCTCATGTTGGTTATGTCAGCCTTTTCCCATTAT
GATGGGGGCCATTCCACCTGAATCATGGGTTCAACAGTACGCAATCAGGCAAATATGAAG
GGACGTTTTTTTGGCATGGAAGAGACAATGTGACAACAAGGGAGTTAAACCCAAAGACTT
TGACATCTGGGTTGGATGACTATCCTCGTGCATCTCACCCTAATGACGAGGAGCGCCATG
TTGACCTTCGGTGCTGGATGCTTCTAGCTACAAACTGTATGCGCTCAATCGCCGGGTTTC
TTAAAATGGACAGCTCTCTTGAGAAGGATTACTATAAATTGTCAGATCAACTTTCAGATT
TCGAGACACTTAACAAGATGCACTTGGATGACAAAACTGGTGCCTATTTTGACTATGGTA
ACCATACAGAAAAGGTTCGTTTGAGATGGTACGAAGACAAGGAGGCTATGAAACGAGAAC
TCCTGCGAGAAACATTAGAAGCCCCGCAGCTGCAATTAGTACCTCATGTTGGTTATGTCA
GCCTTTTCCCATTCATGATGGGGGCCATTCCACCTGAATCATGGGTTCTTG

Homology of Contig U35_38090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69210.1	873	1e-100	protein\|mannosyl-oligosaccharide glucosidase, putative, expressed
Brachypodium v1_2	Bradi2g59037.1	868	2e-101
Arabidopsis v10	AT1G67490.1	852	2e-63	\| Symbols: GCS1, KNF \| glucosidase 1 \| chr1:25280633-25286581 REVERSE LENGTH=852