- Probe CUST_11459_PI390587928
- Source Contig U35_38094
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11459_PI390587928 | Hv_44K_v2 | GGGTGTTGTCTTTGGCCGTCAAGTTTATTCTTATCTGAGTTCATTCTTTCATTCCCAGAA | 565 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.424 | 0.455 | 0.977 | 1.632 | 1.144 | 1.259 |
| Raw | 66.616 | 104.064 | 217.694 | 572.532 | 141.986 | 169.875 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55351.3 | 705 | 2e-24 | 498 - 557 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_55351.1 | 1610 | 2e-24 | 573 - 632 | 100 | 60 / 60 | plus | ABC07697 |
| MLOC | MLOC_55351.2 | 1820 | 2e-24 | 783 - 842 | 100 | 60 / 60 | plus | ABC07697 |
| MLOC | MLOC_55352.2 | 4612 | 2e-24 | 772 - 831 | 100 | 60 / 60 | plus | ABC07697 |
| MLOC | MLOC_55351.4 | 1045 | 2e-24 | 340 - 399 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_55352.1 | 4427 | 2e-24 | 579 - 638 | 100 | 60 / 60 | plus | ABC07697 |
| JLOC1 | JLOC1_35691.7 | 4273 | 8e-25 | 468 - 527 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.6 | 3597 | 8e-25 | 468 - 527 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.5 | 4347 | 8e-25 | 542 - 601 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.4 | 3907 | 8e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.3 | 4269 | 8e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.2 | 4014 | 8e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35691.1 | 4062 | 8e-25 | 571 - 630 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC33920 | 632 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38094 | 632 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus |
Contig Sequence (632 bp)
>U35_38094 632 Hv_44K_v2 GGCCTCACCCTCGCCAGAAAGGCTGGTGGAGGTTCTGTCACGCCACATGTTCAAAAATTT ATTTTGGAGAACTGTATTGGCACTAATGTAAAACGCTTTTCGCTATTTCACACCACAAAA CTTATGCACTAAAATAACCATGATAAACATTAAAAATTTATATGAAAAAATAGAATTAAA GTTTAATTCAGTTGAGGCTGCACTATAGTGCACTATAGTAATGCGGTGTAATGATTTTGT GGTTATTGGTCAGTTTTTCTTCCTGTTCCTGGTCTAAAGCATTGCGTACTCACACAGGTA GGGGGGGCAGATTGTACATATGTGAAAACTATTCTTAAAAAGGTTATAGCTGAGGCGGAA TCATCATCAGATATTGTGATTGATGAACTTTATGAGGAATTTGGCCGTTGTATGTCGTCA AGAGCAAATAACTCAGAGCTTAGTATGGCCAAGATCTATAAGGAGATATCTTTTATTTCT TCTGCATATGGCAATGTGTCCTCGGATCCAGTAAGCTTGGTTGCTCGATTATTATGTTCT ACTAACATGCTCGAAGGGGATACCAGGGTGTTGTCTTTGGCCGTCAAGTTTATTCTTATC TGAGTTCATTCTTTCATTCCCAGAACTTTTCG
Homology of Contig U35_38094 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |