barSeed - Barley Seed Development Database

Probe CUST_11456_PI390587928

Source Contig U35_9001

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11456_PI390587928	Hv_44K_v2	TCTTGGAGAAGTGACCTGGAATATTTTTTGTGTTCATGCTGATGCCGAGGCCTGTTACCT	593	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.737	1.712	1.151	0.803	0.296	0.318
Raw	3219.430	4956.783	2942.270	3228.177	420.980	488.262

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353826	1574	2e-24	1431 - 1490	100	60 / 60	plus	None
MLOC	MLOC_70036.1	1111	2e-24	97 - 156	100	60 / 60	minus	None
JLOC1	JLOC1_46444.1	840	8e-25	659 - 718	100	60 / 60	plus
Harvest35	U35_9001	766	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_9001 766 Hv_44K_v2
TCCTTCAATCCATTAATGAATGGGATCTGGGCTACAGCATCTGGTGATGGGACTATTAAG
CTATTTGACTTGAGAAAACTATCAAGAAGCTTGCATGCTTTCCACAACCATGAGGGCGAG
GTTTTCCAGGTCGAGTGGAATCCAAACTTGGAGACTGTATTAGCCTCCCATGCTGCAGAC
AAAAGGGTGATGATATGGGACGTTAGCAGGATCGGCGAGGAGCAGGCGGACGAGGACGCG
GGCGACGGGCCGCCGGAGCTGCTTTTCGTCCACAGCGGGCACACGGCCAAGATCTCTGAG
CTGTCGTGGAACCCCAGCGAGAAGTGGGTGGTGGCCAGCGTGGCGGAGGACAACGTGCTG
CAGATCTGGGAGGTGGCAGAGAACATATACAGCGACGACAGCAACGGCAACGCCTCGTGC
CTGTCCGCATAACAAGACGCCACCAACTTCTTCCTTCCCTGATACGTGGACGATGGGGAC
ATGGATCCTCATAGCCTTTGGGTTGGGTTGGATGCGTCGCGTGCATGCGGGTGACTTGTA
GGGAGGGCCTGGCATCGTTTCGTCGCTTAATTAGCAGCTGCTACCGTTGAGTATCTTGGA
GAAGTGACCTGGAATATTTTTTGTGTTCATGCTGATGCCGAGGCCTGTTACCTGGTGCGT
GCGTGCGTGTGTGTGCCTGCTGTCAGGCACGAGTTCTCAGTTCTCGTGGTCGTACGGTCC
GCCCGGAATTCTTTTAATCTCGTCTGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36900.1	411	5e-71	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g36580.1	407	3e-79
Arabidopsis v10	AT5G58230.1	424	7e-56	\| Symbols: MSI1, MEE70, ATMSI1 \| Transducin/WD40 repeat-like superfamily protein \| chr5:23556112-23557994 FORWARD LENGTH=424