barSeed - Barley Seed Development Database

Probe CUST_11433_PI390587928

Source Contig U35_9027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11433_PI390587928	Hv_44K_v2	CCAACTAGCTTGAGCGATGGAAGAATTTGTTTTGCTCATTGATCCATGTTTTATTATGTA	513	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.882	0.451	0.977	1.862	1.077	1.309
Raw	3331.453	2576.763	5166.373	13728.193	3258.167	4277.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13461.1	1505	2e-24	665 - 724	100	60 / 60	minus	ABC03692 ABC24720
JLOC1	JLOC1_9117.2	664	8e-25	513 - 572	100	60 / 60	plus
JLOC1	JLOC1_9117.1	585	8e-25	434 - 493	100	60 / 60	plus
Harvest21	ABC24720	639	3e-25	94 - 153	100	60 / 60	minus	ABC24720
Harvest35	U35_9027	666	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_9027 666 Hv_44K_v2
GGGGAGACACTACGAGACAGTCAAGCAGCAAGAGCGGAAGGATCTCCATTCTCCTCGTCC
TCGTCGTCCTCCATCGCCTCCACCTTATCCTCCATTCTGATCATGGCATCCAAGGCCCAA
GGATCCTCCTCCGTGAAGGTACTAATTGTTGAGGATGATGCAGTTCAAAGGATGGTCCTA
TCTAACATGTTGCGCAAATTTCAATGTGAGATTACGATGGCCATGAATGGGAAAGAAGCA
GTTGACCTATTCCTAGAGGGGACCAAGTTTGACATTATTTTTTGTGATAAGGACATGCCC
ATCATGACTGGTCCTGAGGCAGTTGTAAAGATCCGTGCTATGGGGGAAACAGGTGTGAAG
ATTGTTGGGATGTCAGCTGATGACCATGCCATGGAGGTGTTCATAAGTGCTGGTGCTAAT
GTGTATGTGCCCAAACCAATGAAGGTTGAGGCTCTCAAGTGTATAATCCAGGAGGTCATC
AGCAAGAATATGAACACTATGGTCTAGCACAATCCAACTAGCTTGAGCGATGGAAGAATT
TGTTTTGCTCATTGATCCATGTTTTATTATGTATGCATTGTCATGTCATTCAGTATCATT
ATGTTGTTTAATTTTGAGATGTTAATGTTAAAAGTCATTTGTTGTAAGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_9027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None