- Probe CUST_11431_PI390587928
- Source Contig U35_9029
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11431_PI390587928 | Hv_44K_v2 | CCGATGTTGGTTCCCTGTAGAATATATTGAAGTGCTCCCTTTATTTCTTATGTACCATAT | 350 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.320 | 1.379 | 0.973 | 0.924 | 0.398 | 0.491 |
| Raw | 827.749 | 1341.771 | 840.268 | 1266.776 | 188.517 | 255.236 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36421.1 | 634 | 2e-24 | 126 - 185 | 100 | 60 / 60 | minus | ABC19064 |
| JLOC1 | JLOC1_23443.1 | 703 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19064 | 435 | 3e-25 | 353 - 412 | 100 | 60 / 60 | plus | ABC19064 |
| Harvest35 | U35_9029 | 433 | 3e-25 | 351 - 410 | 100 | 60 / 60 | plus |
Contig Sequence (433 bp)
>U35_9029 433 Hv_44K_v2 ACTGAAGCAGCTTTCACTCCAGATGGTCAATATGTAATTTCAGGATCTGGTGATGGTACC TTGCATGCTTGGAACATCAATACAGTACAGGAGATTGCCTGTTGGAACACTCATATTGGT CCTATCACTGCTTTGAAATGGGCCCCTCGTCGAGCAATGTTCGCAACAGCATCAACCGCA CTGACTTTCTGGATTCCCAACGAATCCAGTTCGAGTTAGGTCCCTGAAAAGGAATATGGA ACGTGGAATACGCTAACTTAACAAAAGGGTTGTAGCATGTTCTTTCCTTGACAGGACAGG TATCATGTACGTATGAAGTATCACTTGCTTTATTACCATATGTGGAAACACCGATGTTGG TTCCCTGTAGAATATATTGAAGTGCTCCCTTTATTTCTTATGTACCATATAATACTCCTG TGTTTCTATCGCC
Homology of Contig U35_9029 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |