barSeed - Barley Seed Development Database

Probe CUST_11430_PI390587928

Source Contig U35_9030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11430_PI390587928	Hv_44K_v2	ATCAAAGCAGAGGAGCGGCAGGGGATGAGGAAGGTGAGCGTCAAGATGGAGGTCGCCCAT	157	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373342	1733	2e-24	203 - 262	100	60 / 60	plus	ABC04687 ABC04689
MLOC	MLOC_50730.1	1177	2e-24	191 - 250	100	60 / 60	minus	None
JLOC1	JLOC1_32360.1	844	8e-25	398 - 457	100	60 / 60	plus
Harvest21	ABC19454	218	3e-25	158 - 217	100	60 / 60	plus
Harvest35	U35_9030	219	3e-25	158 - 217	100	60 / 60	plus

Contig Sequence (219 bp)

>U35_9030 219 Hv_44K_v2
GAGAGAGAGGCAGGCCATGAAGTCCACCAGGAACCTGGCGAGAGGCGACGGGCGGCGGCT
GGGGAATGCCTCGCTCATCGCCTTCATGCTCGCGTCCCTCGTCGTGCTCTCCGTCATCCG
GGCCAGGATCTCCCCCATGGAGAAGGCAGGGGAGGCCATCAAAGCAGAGGAGCGGCAGGG
GATGAGGAAGGTGAGCGTCAAGATGGAGGTCGCCCATGA

Homology of Contig U35_9030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None