barSeed - Barley Seed Development Database

Probe CUST_11428_PI390587928

Source Contig U35_9034

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11428_PI390587928	Hv_44K_v2	CAATGGAAAGAATACGAGAATTCTTACGTGTCAGCAATAAGAAACCTCCGGTTATGGTGC	864	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4404.6	1863	2e-24	337 - 396	100	60 / 60	minus	None
MLOC	MLOC_4404.7	1923	2e-24	385 - 444	100	60 / 60	minus	None
MLOC	MLOC_4404.5	646	2e-24	362 - 421	100	60 / 60	minus	None
MLOC	MLOC_4404.3	2739	2e-24	1220 - 1279	100	60 / 60	minus	None
MLOC	MLOC_4404.4	2762	2e-24	1243 - 1302	100	60 / 60	minus	None
MLOC	MLOC_4404.1	3855	2e-24	2188 - 2247	100	60 / 60	minus	ABC38480
MLOC	MLOC_4404.2	3878	2e-24	2211 - 2270	100	60 / 60	minus	ABC38480
MLOC	MLOC_4403.1	7337	2e-24	4611 - 4670	100	60 / 60	minus	ABC38480 ABC47840
JLOC1	JLOC1_2734.6	1600	8e-25	1199 - 1258	100	60 / 60	plus
JLOC1	JLOC1_2734.5	1239	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_2734.4	1154	8e-25	728 - 787	100	60 / 60	plus
JLOC1	JLOC1_2734.3	1723	8e-25	1199 - 1258	100	60 / 60	plus
JLOC1	JLOC1_2734.2	1700	8e-25	1199 - 1258	100	60 / 60	plus
JLOC1	JLOC1_2734.1	1204	8e-25	728 - 787	100	60 / 60	plus
Harvest21	ABC18804	927	3e-25	865 - 924	100	60 / 60	plus
Harvest35	U35_9034	927	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_9034 927 Hv_44K_v2
GGACTGACTAGTCTACACAGAAGCAGAAGCAGACGTCCGTGGCCGTGCGTCCCCGGCCAG
GTGTGGAAGCGTTTTCTGTGGCCTACAAAGGCCCACGCCTTTCCCACTTTCCGCCTTCGC
CGCCCAGCCCACTTGGAGCCACGAGGCAGGGGAGCATCTCGACTATCCATTCCACCCCTC
CCTTCTCCCCGGCGACCGCAATGCCGCTGCCGCTGCCGCTGGCGCAGGCGCAGGAGCTGC
GGGACCGCCTCTCCGACCGCCTCCGCCCGTGGAGCCGCTCCGCGCAGTTCTGGGTCCGCG
CCGTCGACATCTACGGCAGCTACAAGGTGTGCCAGCTCCGCACGGGGTTCGTCAAGGATG
AGGAGGAGCGGGAGGCCATGTGGGAGCAGCAGCACGAGATCGGCGCCCAGAAGATGTACT
CGCTCTGCTCCGAGCTCGGCGGCCTCTTCCTCAAGGCTGCTCAGATTCTGGGCAAGCCCG
ATTTGGCGCCGACGGCCTGGGTGAAGAGGCTCGTTACATTGTGCGACAGGGCTCCGTCCA
CGCCGATCGAGGTTGTCAGAGGTGTTGTGGAGAAACAGTTCTGCAAGAGCTTTGATGAGA
TATTCGATTTCTTTGAAGTTGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGCATCGTG
CAAGGCTTAAATCATCAAAGACAGATGTTGCTGTCAAGGTTCAACATCCAGGAGCTGAAC
AATTGATGATGGTTGATATCCGGAACATGCAAGCATTTGCCTTGTTCTTACAGAAATATG
ACATCAATTTTGATCTGTTCTCCGCCACAAAAGAGATGGAAAAGCAGATATGCTATGAGT
TTGACTTTGTGCGAGAAGCGAGAGCAATGGAAAGAATACGAGAATTCTTACGTGTCAGCA
ATAAGAAACCTCCGGTTATGGTGCCTC

Homology of Contig U35_9034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67720.4	288	5e-145	protein\|ABC1 family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57952.1	478	3e-151
Arabidopsis v10	AT4G24810.2	481	2e-105	Protein kinase superfamily protein \| chr4:12786791-12789598 REVERSE LENGTH=481