barSeed - Barley Seed Development Database

Probe CUST_11423_PI390587928

Source Contig U35_9039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11423_PI390587928	Hv_44K_v2	TTCAAGGTTGGGAATCCAATCAAAAGGTATTCGCAAGTGTAATCAGTTACTCTCTCCGTT	884	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.737	3.239	1.074	0.685	0.333	0.714
Raw	176.307	129.021	40.814	44.633	6.160	16.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7948.4	1711	8e-25	1480 - 1539	100	60 / 60	plus
JLOC1	JLOC1_7948.3	1697	8e-25	1466 - 1525	100	60 / 60	plus
JLOC1	JLOC1_7948.2	1716	8e-25	1485 - 1544	100	60 / 60	plus
JLOC1	JLOC1_7948.1	1723	8e-25	1492 - 1551	100	60 / 60	plus
Harvest21	ABC21345	993	1e-23	49 - 108	98	59 / 60	minus	ABC21345
Harvest35	U35_9039	992	3e-25	885 - 944	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_9039 992 Hv_44K_v2
CATGGTTGAATTCAACGACAAGGAGAAGCTGTTCAATCTCAAAGGCATTGCTTTGGGCAA
TCCTGTTCTCGAATTCTCGACTGACTTCAACTCGAGAGCCGAGTTCTTCTGGTCACATGG
GCTGATATCGGATTCAACTTACAACGTCTTCACGACGGTTTGCAACTATTCACGGTATGT
GAGCGAGTATTACCACGGCTCCATCAGCTCGGTTTGCGACAGGGTGATGAGCCAAGTGAC
CAGAGAAACTAGCAGATTTGTCGATAAGTACGATGTCACCCTGGACGTCTGCATTTCCTC
AGTTTTGATGCAGTCCCAAATCCTCACCCCACACTCAAAGTCTACGGATCAAGTGAACAC
GGAGCTCGACGTGTGCGTCGAGGATGAGACAATGAACTACCTCAACCGAAAAGATGTGCA
AAAGGCAATGCACGCTCAGCTCAACGGCGTGCCCAAGTGGACGGTCTGCAGCAGTGTTCT
TGAATACAAACAGCTGGACCTACAGATCCCGACCATCAACATCGTCGGCGCACTTGTCAA
GTCCGGCATTCCGGTGCTAGTTTACAGCGGTGATCAGGACTCGGTGATCCCCCTGACGGG
CAGCAGGACGCTGGTGCACCGCCTGGCCAAGAGGCTCCGGCTGAACGCAACGGTGCCGTA
CCGGGTCTGGTTCCAAGGGAAGCAGGTTGGTGGATGGACGCAGGTGTTCGGCGACGTTCT
GTCCTTCGCGACCATCCGGGGAGCGTCGCACGAGGCGCCCTTCTCGCAGCCGGAGAGGTC
CCTCGTGCTCTTCAGAGCTTTCCTCGCCAGCCGGCCGCTGCCAGAATCGTTCGAGTGACC
TCAATTGGAGTACTATCTAGGAGTAGTAGTAGCGTCAATCGTCTTTCAAGGTTGGGAATC
CAATCAAAAGGTATTCGCAAGTGTAATCAGTTACTCTCTCCGTTCACTATTATTATAAAA
TGTTTTGAATATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32540.2	347	3e-159	protein\|OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi5g08620.1	466	0.0
Arabidopsis v10	AT1G28110.1	461	3e-149	\| Symbols: SCPL45 \| serine carboxypeptidase-like 45 \| chr1:9804153-9806832 REVERSE LENGTH=461