- Probe CUST_11420_PI390587928
- Source Contig U35_9042
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11420_PI390587928 | Hv_44K_v2 | AAGAAAACAGCAAAGCTAGACCAGGACAAGATCCCCAAGTTCTCCAAGTACTTCGAAGAG | 576 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.046 | 1.360 | 1.635 | 1.420 | 0.544 | 0.549 |
| Raw | 220.256 | 460.106 | 466.286 | 646.256 | 88.001 | 93.431 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375301 | 2019 | 2e-24 | 1439 - 1498 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54283.2 | 1673 | 2e-24 | 1190 - 1249 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54283.4 | 1743 | 2e-24 | 1028 - 1087 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54283.3 | 1795 | 2e-24 | 1156 - 1215 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54283.1 | 1859 | 2e-24 | 1207 - 1266 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_34935.1 | 1739 | 8e-25 | 1205 - 1264 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19643 | 738 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9042 | 738 | 3e-25 | 577 - 636 | 100 | 60 / 60 | plus |
Contig Sequence (738 bp)
>U35_9042 738 Hv_44K_v2 AAAATAGATGACGTTGAACAAGTTTTAAAAGAAATGGAAGAAAAGGATGGGGTTCTAGGG TGGTCTGCATACAGCACACTGGCTTCCATCTACCAGAGTGCTGGTTTGGTTGAAAAAGCA GAGTCTGCTCTGAAGAAACTTGAGGGCCTTGTTCAAGATCGTGATGGCAGGCAGCCTTTT GATTTCCTCATGAGTCTATATGCTTCCGTAGGCAATTTGAGCGAGGTCAAGAGGGTGTGG GGCGTGGTTAAGGCCACTTTCCCAAAGGTGACAAACACGAGCTACTTCAGCATGCTGCAG GCTCTTCTTAAGCTCAATGATGCCGATTACATGAAGCAGGTCTTTGAGGAATGGGAGTCC AATCATGAGTTCTATGATGCCAAACTGACTAATGTGATGACTCGAGCCCATCTGAAGAAC GGCATGGCCAAGGAAGCGGAGCTGTTGTGGGAGAAGGCCAAGGAAAAGGGTGCCTGTTTC GACTCCAAAACATGCGAGTTGTTTCTCGATCACTACATGGTGGCAGGGGACATGAAATCA GCGCTGAACTGGGTCGAGAATGTGACGAAGCTCCCCAAGAAAACAGCAAAGCTAGACCAG GACAAGATCCCCAAGTTCTCCAAGTACTTCGAAGAGCAGAAGGACGTGCAGGGTGCGGAG AGGTTCTGCCGCTGCCTGAGGGCGCTCGGGTGCATCGACGGCAAAGCGTACGAGTCCCTC CTGCGGACTTATCTGGCG
Homology of Contig U35_9042 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g19490.1 | 523 | 1e-115 | protein|pentatricopeptide, putative, expressed |
| Brachypodium v1_2 | Bradi2g11510.1 | 546 | 5e-135 | |
| Arabidopsis v10 | None |