barSeed - Barley Seed Development Database

Probe CUST_11416_PI390587928

Source Contig U35_9047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11416_PI390587928	Hv_44K_v2	CCTTTTGTCGTCAGTGTGCCGTTATATTGATTGAGTTGAAGATGCTTGAATTTTGTGCTG	654	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.998	1.437	1.364	0.932	0.339	0.314
Raw	1581.813	3480.747	2967.837	3243.487	410.688	411.631

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51294.1	2085	2e-24	17 - 76	100	60 / 60	minus	ABC49838
MLOC	MLOC_51294.2	1991	2e-24	5 - 64	100	60 / 60	minus	ABC49838
JLOC1	JLOC1_32756.1	2075	8e-25	1929 - 1988	100	60 / 60	plus
Harvest35	U35_9047	734	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (734 bp)

>U35_9047 734 Hv_44K_v2
CTTCAGTACAGAAGAATGGACTTCCATGAGTTCTGTGCGGCTGCGGTAAGTGTTCACCAG
CTTGAAGCATTAGACAGATGGGAGCAACATGCGAGATCCGCTTATGAAATTTTCGAGAAG
GATGGCAATCGAGCCATTGTAATCGATGAACTGGCTTCAGAACTGGGTCTCAGTCCCTCC
GTGCCGCTGCACGTCGTTCTGCAGGACTGGATCCGACACACCGATGGGAAGCTCAGCTTC
CTTGGGTTTGTCAAGTTGCTGCATGGAATGTCCAGCCGGTCCCTGTCAAAGATGAGATAG
CTGTGGATAATCTCTAACGACAGTACAAATTTATGCTTCCCCAGCCCAACTTAGCAAGGC
CGAGACTGCACACAGAGGATGACACGACACGCCGCTGCCTGCGCTAGAACCTGCCTGGTT
TTGCCACTAATTTGAGTATAGAGTTCTGTTTGCGGTCGCCCGTGTACTGATCATCACCAT
CTTCTTCAAAGTTCATCAGCATCATCTTTTAGTAGGTTAGGAAAAGGAAATTTCACCCGT
GTCTCGGCAACATGTGGCCTCTAACAGTCTCTTAGAATAGCATGCCCAGCCATGTCTTGT
CGCTGTGGGCAGCGTTGTAAAATGCCCCCGTTCATGTAACTGGAGCAGAGTCGCCCTTTT
GTCGTCAGTGTGCCGTTATATTGATTGAGTTGAAGATGCTTGAATTTTGTGCTGCCANAA
AAAAAAAAAAAAAG

Homology of Contig U35_9047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42770.1	454	5e-52	protein\|CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g21110.1	602	7e-53
Arabidopsis v10	None