barSeed - Barley Seed Development Database

Probe CUST_11414_PI390587928

Source Contig U35_9050

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11414_PI390587928	Hv_44K_v2	CATGTGTTCTGGGTTGATGCCGCAAGTAGGAAAAACCAGAGTTGAATCAGTATCTTTTTT	572	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.231	0.273	0.364	1.939	2.922	3.233
Raw	11.705	21.113	24.993	202.497	113.564	131.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73663.1	1186	3e-21	1118 - 1177	97	58 / 60	plus	ABC20821
JLOC1	JLOC1_49041.1	1327	2e-21	1009 - 1068	97	58 / 60	plus
Harvest21	ABC20821	729	3e-25	573 - 632	100	60 / 60	plus	ABC20821
Harvest35	U35_9050	729	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_9050 729 Hv_44K_v2
GCAGCGACAGCAAGGGGATGGCGCCATGGATCATGAGGAGGAACTCTTCCTCTCCTCGTT
GCTCTCCAAGTTGGACACGCTGGAAAACGACGCTGATCCGGACGGTGCCGAACTGAGCTC
CGTCAACCCTGACCCGGATAGCGGGAAGGAGGCGGGGCCAGGCGACGTAGCGAAAGATCT
GAGCAAGATCAAGAGGCAGAACATGATCACCCACGTCCTGCTCGGCACGGTGATGGTGAT
GATCGCCGCGTGGCAGTTCAACGAGGTGTCCTTCCTCCTCGCGGTGCAGAAGAAGCTGAC
CAATCCGTTCAAGACCGTCGGGGATATGGTCAAGAGCACCCTGAAGATAGGGAAGAAGCC
GGTGGTCGAGGCGATCGAGGCGTCGCCTCTGCCCTCTGTTGGTGCCCCGGATGTTGCTCG
GGTTGATTTGCCGATGCTAGCCATCGGCGATGGTGATAGCTAGATCCGCAGGATGATGGG
GAATGACTCGTGCATCAGAAATGCCATTGTGTTTTCCCCTCCAGAATATGTTATGTTGTT
CATTTGTATGGCCACTCATGCATGTGCTGGTGCATGTGTTCTGGGTTGATGCCGCAAGTA
GGAAAAACCAGAGTTGAATCAGTATCTTTTTTTCTGGAACTGTGATTCATTATCTTATGA
TAATTGCACCATTTATTACTGGAATCAATCATCATCAGCCGAAAAAAAATGAGAAGGTCG
AAAAAAAAA

Homology of Contig U35_9050 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None