- Probe CUST_11413_PI390587928
- Source Contig U35_9051
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11413_PI390587928 | Hv_44K_v2 | GCCTAGCATGATGCTTCTATTATTGCTCGATCAACAATTTATTGCAGCTTCTTATAAATG | 261 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 10.428 | 6.085 | 1.635 | 0.389 | 0.068 | 0.087 |
| Raw | 17196.167 | 15152.783 | 3646.933 | 1349.561 | 89.809 | 118.658 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80797.1 | 241 | 3e-21 | 58 - 114 | 98 | 56 / 57 | plus | ABC20000 ABC32170 |
| Harvest21 | ABC20000 | 369 | 3e-25 | 253 - 312 | 100 | 60 / 60 | plus | ABC20000 |
| Harvest21 | ABC32170 | 385 | 6e-22 | 266 - 325 | 97 | 58 / 60 | plus | ABC32170 |
| Harvest35 | U35_9051 | 378 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus |
Contig Sequence (378 bp)
>U35_9051 378 Hv_44K_v2 AAAAACCAGCGATTCTCCATCGATCTCTTCGCCATGGCAGCCACGAGCAATGCGACCTGG ATGGCTGCAGTTTTCGTTGTTCTTATGATCATGTCTTCCACCCTATCATCTACATCATGC TACGCACGTACAATTGAAGATGGAGCGAATTCTCCAGTGTGCTTCCATGTGGGAAAATGT CAAGACCATTGCCAGACCGCATGCAGCGTCAGCGGCAAGCCCTCGACTGGAGCGTACTGC AAGATCGATGAGTGCTGTTGCGCCTAGCATGATGCTTCTATTATTGCTCGATCAACAATT TATTGCAGCTTCTTATAAATGTAATATTGGTTACCGAAAAATTATCAGTTGAGTTTTTTT TAAAAAAAAAAAAAAAAA
Homology of Contig U35_9051 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |