barSeed - Barley Seed Development Database

Probe CUST_1140_PI390587928

Source Contig U35_21150

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1140_PI390587928	Hv_44K_v2	CATCTTCGGTTTGTCAAATTGTTGTACTTCTTGGTGTACAAAGAAATTGACACTACTTCA	1417	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361879	2106	9e-22	2022 - 2083	97	60 / 62	plus	ABC15251
MLOC	MLOC_74840.1	2151	9e-22	653 - 714	97	60 / 62	minus	ABC08944 ABC15251
JLOC1	JLOC1_49894.1	2167	5e-22	664 - 725	97	60 / 62	minus
Harvest21	ABC15251	1490	3e-25	1418 - 1477	100	60 / 60	plus	ABC15251
Harvest35	U35_21150	1490	3e-25	1418 - 1477	100	60 / 60	plus

Contig Sequence (1490 bp)

>U35_21150 1490 Hv_44K_v2
GCCGGAGTCGGACCCCAGAGGATTGCAAGGGGAAAGGCGAGCGAGGACTCTACGTCGTCT
GAAGAGGGGACGCCGAGGGCTGGGCCCGGCCGCTATTCGGCCCAGCCCGCTCGAGCCTCG
GCTTCCACTTCCGGCACGCTGTCCATGGTGGAGTCCGACTCCGACTCAGAGCAGGATTCC
ACCAGCCTAGGCGGCACGTCTCCGTCCGCCACCCCGCCCCGGATTCCCCGAATCCCGACG
GTTCCCTCGGACGAGTCGGCGCAGCGCCCGGACTTCTCTGCTCACCCTTCCGACCAAGTG
CTCATCAAGTCGTACCTCACTCCGCGCGTCGCCTCCGGCGAGCACCCTTGCCACTTCACC
CACGACGCCGACGTCTACACCGCCAGCCCCGGCGCCCTCACCAGGACGTACTCCCCGGCG
ATGGCAAGCGACGGCGAGAAGGCCTGGTACTTCTTCACCGTCCTGCCGGCCAAGAGCGCC
CACGGCCAGAGGCGGCCGCGCACGGTGGGCACCGGGGAGGGGTGTTGGCACTCGGAGGCC
GGCGTCAAGCCTGTTCTCGACGGCGACCACCCGATAGGATGGCGGCAGTTCTTCTCCTTC
ATGAGCAAGGAGGAAGGCCAGCGGGTCCGGAGCATCCGGACGGGATGGATCATGGTTGAG
ATCGGCCTCGACCATGGCCAACAAGAGGGCCCCTCGGACGAGCCCGTCCTGTGCAAGGTG
TACCGCAGCCCGCGCGCCGGCCCGGTGGTGGAACCCAAAGCGGCGGCTGGACGCAAGCGG
AACTCAAAGCGGCGGCTGGACACTTCTGGCGCAGGGACGCCCGTGCTGACCCTGGGGCAC
GCGCTCGGGACCAGGAATTCTACGGCGACGGCGACGGCGACGGCGACGGCGACATCTTCC
TCTGGGCGCAAGAAGAGGAAGACCGACAGCAGGAACCCCGGCCCCGTGCTGAGGCCCGCG
CGCGGTGTTCTGAAGTTGACGAGGCCGGCGACGCCTGGGCGCAAGAAGAAGGATCTATGC
GTTCGCTGTGGGGTGGAGCCAGCGGAGTCGCACAGCGGAACGGCCGAGGAGGAAGACGGA
TCGGAGACGGATCTTGTCGAGGACGACTCTATGACCGGCGAGTCCGCCGCCATCCATGGA
AACGAAGCAGGTGAATCTTCAGGCGGTGCCAGAACGTTCTACCAATTCGTCTAGCCCGGC
GCTCTTGGTTGGGTCACACCAGTTCAAGGCTTGACACTAGCTAAGATGATCCCCAGTTTT
CCCCTGAAACATGCCTTCCCAGCGAATTTTGTGTCCACCGCCAGGAGGAGGGGGATAGGT
CAAGGAGGAAAAAAAAAATCCATGATTCTGCTTTGTATCCACCACCAGCAATTTACTATT
CGTTCTAGTTATGCACATCGGATTAAATAGATATAGCCATCTTCGGTTTGTCAAATTGTT
GTACTTCTTGGTGTACAAAGAAATTGACACTACTTCATAAAAAATTCGCA

Homology of Contig U35_21150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48446.1	291	2e-60	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi2g46430.1	587	2e-102
Arabidopsis v10	None