barSeed - Barley Seed Development Database

Probe CUST_11404_PI390587928

Source Contig U35_6892

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11404_PI390587928	Hv_44K_v2	TCATATCATGTCTAACTGTGTAAGCGTGGTGTTAATTATAAATCGACTGCGTCTTCATTT	520	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.419	2.728	1.470	0.649	0.050	0.011
Raw	2217.990	7109.790	3152.380	2305.819	61.840	8.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18219	580	3e-25	521 - 580	100	60 / 60	plus	ABC18219
Harvest35	U35_6892	580	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_6892 580 Hv_44K_v2
GTTCTGGTGACGGACCGAACGCCACCATTTGTTCAAGCGCCGCAGGGTCGGTCTGAAGAT
GAATGTCAATGCAGCCGCGCCCATCTTGCTCCTCCTGCTCGTTGTTCGATGCCACGCATT
CTCCGCACACGGCGATGACGCCGAGGGATCGGGCGGCGGTCTCCGTGAGCTGGGCGAGGG
CGGCGGCAGCAGCAGCAAGGCTAAGGTCGCCGGGTTGTGCGTTAACAGCCCGTGCGACGC
GGACCCGAACCGGATGTGCTTCTGCTGCACGAGGCTGGCCAACGAGCCCTGCTACGACAC
GCTGAGGCAGTGCGTCAGCGTCTGCCCCAACTGCAACTTCCCCGTCTGTCCGCCGCCGGC
GGCCTCGGCGGGCCGGCGTACTCGGTTCGTGTTAGCTCCGGCGTCGGCGTGATCTGTATG
CAGGCGATGCTTAGCTAATACAGTTGATTTTTTTTTTTTTGCGGGAAGCTAATACAGTTG
ATTAATGTAACGAGGCATCCAGATTGCAGAGAATGGGAAATCATATCATGTCTAACTGTG
TAAGCGTGGTGTTAATTATAAATCGACTGCGTCTTCATTT

Homology of Contig U35_6892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None