barSeed - Barley Seed Development Database

Probe CUST_11400_PI390587928

Source Contig U35_6896

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11400_PI390587928	Hv_44K_v2	ATTCTGGGAGTAAGGATGGAACGGTGCGCCTTTGGGATTGTCAAACTGGACAGTGTGCTG	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359452	1940	2e-24	733 - 792	100	60 / 60	plus	ABC10035
MLOC	MLOC_68293.3	2075	2e-24	1219 - 1278	100	60 / 60	minus	None
MLOC	MLOC_68293.1	2290	2e-24	1458 - 1517	100	60 / 60	minus	None
MLOC	MLOC_68293.4	1592	2e-24	738 - 797	100	60 / 60	minus	None
MLOC	MLOC_68293.2	3957	2e-24	3095 - 3154	100	60 / 60	minus	None
JLOC1	JLOC1_45170.8	1546	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.7	2306	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.6	3946	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.5	3905	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.4	3710	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.3	3657	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.2	3731	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_45170.1	2719	8e-25	790 - 849	100	60 / 60	plus
Harvest21	ABC14414	811	4e-24	754 - 811	100	58 / 58	plus
Harvest35	U35_6896	813	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_6896 813 Hv_44K_v2
GAGCCGGCCCAACCTTCCGCCCGCGAGCTAAACCCGACCAAGGGGAAAGCAGGGCCACCG
TAAGCGCCTCCTCTCCCCGCTCCGATCCGGATCTCCCCATCCATTCCGGCGAGCCCTCGC
CGCGTCGCTTCCACGCGACCCTACCTCCTAAATAAATTCAACATCCCCGCCGCTGCTCCC
GTCAAACCCCGAATACCATCTGACTACTTCCTCCTCTGCCCGCGCCGCCTCCCGAGCCCA
ACAAACCCTAGGCGACGCCCATGGACTTCGAGGCCGACGGCCGCTTCGGCAACAAGCGCG
TGCACAACCGCCTCGGACCGGCGCCCGGTGCCGCCTCTTCGTCTTCCTCTACCAAGGTCT
GCATCCATTGGCGCGCTGGGCGATGCAATCGCTTCCCCTGCCCCTTCCTCCACAGCGAGC
TCCCTGAGGCGGCCACCACCAAGCGCCCGAACCAAAGGGATGGCCCTGGTGGGCACGTCT
GGCGTAACCCCAACTCAGGAGGAGGGGGGCGCGGCGGCGGCGGTGGCTACAACAAATGGG
GGAGGGGCCCCGGAGGTGCAGACGGTGGCGTGAGGCACAAGGTGCCCGACCGGCCCTGCA
AGTTCTTCCTCGCCGGAGACTGCACCTACGGCGAGAAGTGCCGCTACCCCCACACATATT
GCATGAGCAATAGCATCACGCTGCTCACCCCTCTCCAGGGCCACGAGAAGGTTGTGACAG
GGATCGCACTGCCTGCTGGGTCAGACAAGCTGTATTCTGGGAGTAAGGATGGAACGGTGC
GCCTTTGGGATTGTCAAACTGGACAGTGTGCTG

Homology of Contig U35_6896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45480.3	274	2e-84	protein\|nucleic acid binding protein, putative, expressed
Brachypodium v1_2	Bradi3g51650.1	433	2e-97
Arabidopsis v10	None