barSeed - Barley Seed Development Database

Probe CUST_113_PI390587928

Source Contig U35_4814

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_113_PI390587928	Hv_44K_v2	GTTGCAACAACTGTGCAAGATGTCCATCTTTGGAACATGATACTTGTGTTAAGCAAGTCT	853	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.782	1.818	1.040	0.897	0.417	0.389
Raw	373.382	608.158	303.310	408.957	65.971	67.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371919	1584	2e-24	1518 - 1577	100	60 / 60	plus	ABC10538
MLOC	MLOC_74007.1	1860	2e-24	1783 - 1842	100	60 / 60	plus	ABC10538
JLOC1	JLOC1_49301.1	1856	8e-25	1758 - 1817	100	60 / 60	plus
Harvest21	ABC10537	913	3e-25	854 - 913	100	60 / 60	plus
Harvest35	U35_4814	913	3e-25	854 - 913	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_4814 913 Hv_44K_v2
GGCAGGATATTGCCTCACATGGATGTTTTAGCCTTGGGATGATTGCTCGATTTGAACCTG
TGCTGGATGACAAAGGTGAATGGATGTATCCTCGTTTATTCTGGGAGACTGGTGTTCTTG
GTCAAGTTCTCTACCTTGAGGCGCATGCTGTAGGGATATCTGCCACGGGGATTGGTTGCT
ACTTTGATGATGCTGTTCATGAGGTGCTTGGTTTGAAAGACCTGGAGTTCCAAAGCTTGT
ACCATTTTACGGTGGGCGCCCCTGTGGTTGACAACCGGATCATGAGTCTCCCTGCATACC
CAGGGCCAGGGATTGATGCATGATTCCTATTTCCTGGGTCCAGCCTGGAGCGACTGACGA
TATATGCCAACATCTGAATTCCTGACCTGGATGAAACCAGGAGTACTGTACAGTTCGTGT
TCTTGTATGACAAAGCAACCGGGTGAAGGAACCTTATGACGGCAACACAAGTCTATTTGG
ATATTTGTGCATGATCAGATCGTGGTATGTTATCTATAGTCATGCGAGAATATATGAGAA
ACAAAAGGGGTGCTCGGAGATATATAGAAGGCGTGCTTGGTTGGCAGCCGATTTTTGGCT
CGTATGTAACAAGGGTGGGCTTCTCCTGGGACGGGCAACATGATTTTGGCTCTGGAAACT
CAAAGTAGATGTGGATATTGATGCACAGGGCAAATCCATATTGATATCTAAATTCAAGAT
TTCAGGTCACCTGCTTGCCCATTGGGATGATATTCATAGAAGTGTAATGTTTATGACCTT
TCTGATGTAAGTCTTGTGTGAGAATCCCAGTAGGGAAGGAAAGAAGGTTTATTTCCGAAT
TGTAAAGCCAGTGGTTGCAACAACTGTGCAAGATGTCCATCTTTGGAACATGATACTTGT
GTTAAGCAAGTCT

Homology of Contig U35_4814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11340.1	613	6e-63	protein\|nitroreductase family protein, putative, expressed
Brachypodium v1_2	Bradi3g22960.1	554	9e-65
Arabidopsis v10	AT1G02020.1	642	9e-54	nitroreductase family protein \| chr1:352842-354845 REVERSE LENGTH=642