- Probe CUST_11396_PI390587928
- Source Contig U35_11900
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11396_PI390587928 | Hv_44K_v2 | AAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCAG | 559 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.293 | 0.907 | 1.361 | 1.383 | 0.500 | 0.474 |
| Raw | 43.430 | 46.353 | 63.303 | 107.540 | 12.827 | 13.022 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68085.4 | 1659 | 2e-24 | 453 - 512 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.7 | 1980 | 2e-24 | 546 - 605 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.3 | 2008 | 2e-24 | 534 - 593 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.6 | 1650 | 2e-24 | 580 - 639 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.5 | 1666 | 2e-24 | 514 - 573 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.1 | 1792 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.2 | 1804 | 2e-24 | 597 - 656 | 100 | 60 / 60 | plus | ABC18974 |
| JLOC1 | JLOC1_45014.7 | 1842 | 8e-25 | 508 - 567 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.6 | 1849 | 8e-25 | 515 - 574 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.5 | 1838 | 8e-25 | 504 - 563 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.4 | 1899 | 8e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.3 | 1884 | 8e-25 | 550 - 609 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.2 | 1923 | 8e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45014.1 | 1841 | 8e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24336 | 653 | 3e-25 | 560 - 619 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11900 | 653 | 3e-25 | 560 - 619 | 100 | 60 / 60 | plus |
Contig Sequence (653 bp)
>U35_11900 653 Hv_44K_v2 GACCTTCTGATCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCGCCGGAGACATGGAG GAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCCGGCGCCGTAGTAGGC GGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGCGGAGAGAGGGATAC GTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGCAGTACTGGACCGGGAGCACGT CTGCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGCAGCTTACAAGGAAT ATACAATTTTTTGGAGTCCAATCTCAGAAGAAAGTTACTGAATCTTTTGTTGTAGTCATT GGTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGG TTGCTCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAATCGGCATGCTGTGGCA ACCAGAGAGGACGTGGGGACCCCAAAAGCGTCATGCCTCAAGAAGCATTTCTCATTGATA TATCCAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAA ATTCTTTCTGGACAGCCAGATTNTGTTCTTGATTGCATAGATAACATTGATAC
Homology of Contig U35_11900 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g14040.1 | 459 | 3e-74 | protein|ThiF family domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g44307.1 | 391 | 3e-82 | |
| Arabidopsis v10 | AT5G37530.1 | 457 | 3e-58 | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |