barSeed - Barley Seed Development Database

Probe CUST_11383_PI390587928

Source Contig U35_11917

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11383_PI390587928	Hv_44K_v2	TTTCTCCGAGTATTGAAATATTCATCAGGGGCGGTACTTGAGCCAGCCAAACTTTACAAG	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363680	3035	7e-23	306 - 365	98	59 / 60	plus	ABC07401 ABC30922 ABC41631
MLOC	AK364857	2875	7e-23	230 - 289	98	59 / 60	plus	ABC07401 ABC30922 ABC41631
Harvest21	ABC22483	674	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_11917	671	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_11917 671 Hv_44K_v2
CCGCCACATCCTCCCCGTCCCTGCCCCCTCCCGATCCACACCTCCTCTCCTTCCTAAGGT
CATCAGGTGCAGGTCGCGTCCGCGCTCTCCGTGCCGATCCTCTCGGCGCTGCTCGCCAGG
GCAGTCGCGCTCGTCTTCCTCGTCGAGTACCTACACCACAAGCACGCCGACATCGCGCAC
GTGCCCCCCTCCGTCGTCGCCGCCGCACCGGACCTGCCCAAGCAGGTCCGCCCCGCCCAT
GTTCAGATCCTACCCTCTGCTCCTCGTCGCGGGCCTCCTCACCGCGCTGCTCCTAGCGGC
GGCCGCCACCTTCGGGCCGTAGCCGGGGGCGCCGTGTGACCCCACTCTCCTGGCGATGCA
GGACGCGCTCTTCTACGCCCCCGACATGCCCACCACGCAGTGCTGCGAGCCCGTCGTCGC
CGCCGTCGACCTCGGGGGCGGCGTCCCCTGCCTCTGCCGCGTCGCGGCCGAGCCGCAGCT
GGTCATGGCCGGCCTCAACGCCAGCCACCTCCTCAAGCTCTACACCTCCTGTGGCGGTCT
CTAGGACGGCGCCCGCCTTGCCGCCGCTTGCGAAGCTAAACATTCGTGAAAAGGCGAGGC
AGATAAAGCCTTTTCTCCGAGTATTGAAATATTCATCAGGGGCGGTACTTGAGCCAGCCA
AACTTTACAAG

Homology of Contig U35_11917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None