barSeed - Barley Seed Development Database

Probe CUST_11373_PI390587928

Source Contig U35_11928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11373_PI390587928	Hv_44K_v2	AAACTGTGCTCTATGCTGTAGACTTGGGATTCAGTTAGTTTATTTCCCCAAAACTGTACA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36826.1	5028	7e-23	3493 - 3552	98	59 / 60	plus	ABC06674 ABC30143
MLOC	MLOC_36826.4	3744	7e-23	2155 - 2214	98	59 / 60	plus	ABC06674 ABC30143
Harvest21	ABC25649	671	3e-25	609 - 668	100	60 / 60	plus
Harvest35	U35_11928	671	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_11928 671 Hv_44K_v2
GGCTGCAGGGTGGAGCACTCGAACTCGGACCCGAGGGTGTCCAACACAGTCGACGAGCAA
ATCGACTCCATTTTCGTTTCCTGAAGACATACAATGGATGCCCGAGTAGTACATAGCAGA
GAGCGGATCGCGCAGCGCCTAGCGCGCGAGTTTAATCCCCTAACATTCCAGACGGCTATC
TGAGGACCTGGATACATGGGAGAGAGATCGACAACAGTCGCCGCTGGCCTAGCGCGCACT
GACCATCAATATTCGCATGTCTCTAAATGTATGTGGTGACTAAATTTTAATTAAATAATG
TGACTAAGAGATGGCATCTAGAGGTTATTCTTAGTACTGTAACTGGAAAACGTGAACGCT
AGTGACATGTAATTCCGATAAGCAGATCCACTAACGTGTTTACCGTTCTTGTTTACTCTT
TTAACATGGTGGTACTGCTGACATTCTTTGCAGTGAAGTTATTAACACCAACTGGAAGGA
CTGTGAAAGATCTGTATTGCATATCTATCATGAACTTATTCAGTATGGGCTTCGTATATG
GATGTTCAGGTTATTCCTAACTCTCTGAAGTCTTTACCCACTCATGCACTCAAAGATGGC
TCTATGCTAAACTGTGCTCTATGCTGTAGACTTGGGATTCAGTTAGTTTATTTCCCCAAA
ACTGTACATTT

Homology of Contig U35_11928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None