barSeed - Barley Seed Development Database

Probe CUST_11367_PI390587928

Source Contig U35_23905

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11367_PI390587928	Hv_44K_v2	CTATACATTTTGTGACAACAGGCATGCATGATCAACGTCTCAATGCCACATTTTCCCAAA	442	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.548	6.787	1.385	0.782	0.818	0.890
Raw	85.587	98.328	17.285	15.045	3.710	5.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361731	2072	7e-23	1880 - 1936	100	57 / 57	plus	ABC44737
MLOC	MLOC_36869.1	3192	7e-23	2801 - 2857	100	57 / 57	plus	ABC44737
JLOC1	JLOC1_23794.1	3093	4e-23	2776 - 2832	100	57 / 57	plus
Harvest21	ABC44737	516	3e-25	15 - 74	100	60 / 60	minus	ABC44737
Harvest35	U35_23905	516	3e-25	443 - 502	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_23905 516 Hv_44K_v2
GGATCAAAATGTTGCGAATGATCCATGGCATGGATTTGAGGAGTGGTATCTAAAGGAGGA
AGTCAACAACCTTCTAATCTCAAATCTAACTGAACGTGAGAGGCACATCATTCGGTTATA
TCATGGTATAGGAAAACAATGCCATACATGGGAGGATATTAGCAGACAGTTCGGGCTTTC
CAGGGAGAGGGTGAGGCAAGTAGGGCTTATCGCAATGGAGAAGCTGAAGCATGCTGCGAG
GCGGAAAAAGCTGGATGCGTTGCTCCAGGATTACTGAGCTGAGGTGTTTTCCATGTTGTG
CTGGGGCTAAATCCAGACACACAGTGGTTGTATATAGTCGAATCCAGACACACAGTGGTA
GTATATAGTCGAAAAGAGAGAGTGACACATAGGTTACATCATTGAATGGCTTCTACTGCC
ACTCGTCTGCAGATAATCATACCTATACATTTTGTGACAACAGGCATGCATGATCAACGT
CTCAATGCCACATTTTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06630.1	521	2e-51	protein\|RNA polymerase sigma factor, putative, expressed
Brachypodium v1_2	Bradi3g16040.1	532	7e-53
Arabidopsis v10	None