barSeed - Barley Seed Development Database

Probe CUST_11366_PI390587928

Source Contig U35_23906

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11366_PI390587928	Hv_44K_v2	GCTATTCTCTTGGTTGCAGACAGACAGACTTTGACAGTTTTGTTTTTTCCTTGTTAAAAA	409	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.248	1.522	1.070	0.740	0.240	0.184
Raw	4307.383	8122.457	4996.047	5411.660	628.505	516.559

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18823	481	3e-25	410 - 469	100	60 / 60	plus	ABC18823
Harvest35	U35_23906	481	3e-25	410 - 469	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_23906 481 Hv_44K_v2
GCTGATGCCGATGCCCCGCGGAGAGGAGGAGCTGCCGTCGGATGCGATGATGGGCGGGTG
GGCGGGCATGATGCGGCAGATGGAGTCGCGCTCCTGCGGCATCGACATCAACTCGATCCG
GGAGTGAACGATGTAGATTGTTTAGTTTGGTACGGCGGAGGTTCAGCCTAGGCTAGCTAG
TGGATGATGATTCTAGGGGTTGGTTGGGTTGGGTTGGTTGCGTGTCTCTCCTGCGTGGGT
TTAAAAAGAAGTCTAGTTTAGTATAATGAATGTCGTCGAGTATGATCAATTTAACCGAAG
ATGTTGGCAGATCTATGATAGAAATAGTGGATTCGGTTGTTGGTTGATGGTCTGGTATGA
TCTGGTATGGTATGTAGTTATAGGCAGCAGCAGCAATGAGCAACTTGTAGCTATTCTCTT
GGTTGCAGACAGACAGACTTTGACAGTTTTGTTTTTTCCTTGTTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_23906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None