barSeed - Barley Seed Development Database

Probe CUST_11365_PI390587928

Source Contig U35_23907

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11365_PI390587928	Hv_44K_v2	TGATGTTACCTGTTGCTATACAGTGCTTGTATGTGGATGGTTAGTCACCAAACCGCTAAA	662	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.347	2.264	1.235	0.647	0.176	0.140
Raw	1350.346	2052.928	944.730	779.365	73.157	64.851

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38338.1	1223	2e-23	733 - 790	100	58 / 58	plus	ABC23354
JLOC1	JLOC1_24921.1	722	1e-23	504 - 561	100	58 / 58	plus
Harvest21	ABC23354	736	3e-25	15 - 74	100	60 / 60	minus	ABC23354
Harvest35	U35_23907	736	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_23907 736 Hv_44K_v2
GATCCCCCGGGCTGCAGGGGCGGCTCGGGCCACATCTCCATCACCGTGCCGCGCTTCGTG
TTCGTCGCCGAGGACGACTCCCCGGGCTCCTCCTCGCGGGGCGCCACCGGGTCCACCCCC
GTCGGCCTCGACCCCGCCGTGATCGCCTCCTACCCCAAGGCGCCCTTCGCCCGGGCCGCC
GCCGGCGACCTCGCCTGCTCCATCTGCCTCTGCGAGTACCGCGACGGGGAGATGCAGCGC
ATCATGCCCGAGTGCCGCCACCGCTTCCACCTCATGTGCCTCGACGCCTGGCTGCGCCGC
AGCGCCTCCTGCCCCGTCTGCCGCTCCTCGCCCATCCCCACCCCCGTCACCACCCCGCTC
AACACCCCGCTCTCCGAGATCGTCCCGCTCTCCCAGTACGCCGCCGACCGCCGCCGCCAC
AGGTGACCCAGATTTACTCCATTTCTTACCACCATCTGCTGCTGCTGCTGCTTGTCAGCA
ATGGGTCGATTATTTAGTTCGTCAGGAGAGGTTTCGCTAATCTTAATCTGAGGGGTCACT
TAGGAGTATCTTCAAATTGCTCAAGTAGAACAGCGAAAGTTTTGCAGTAGATCGATGGAC
TGAGGCTGGCAGACAAGCCGTGTAAATACATTGTTCCTCCGTTCTAATATAGCTTTATCA
ACTGATGTTACCTGTTGCTATACAGTGCTTGTATGTGGATGGTTAGTCACCAAACCGCTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_23907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45060.1	208	1e-61	protein\|RING-H2 finger protein ATL2M, putative, expressed
Brachypodium v1_2	Bradi2g19210.1	205	4e-63
Arabidopsis v10	None