- Probe CUST_11363_PI390587928
- Source Contig U35_23909
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11363_PI390587928 | Hv_44K_v2 | ATCCACCAGACTTAATTTTGCTGTTGTTCCATGTCAGTTGCTGCACCCGGTTTGTTCTTC | 437 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.410 | 1.189 | 1.171 | 1.018 | 0.320 | 0.227 |
| Raw | 1016.715 | 1377.155 | 1195.479 | 1597.216 | 184.603 | 139.575 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11873.1 | 1719 | 2e-24 | 126 - 185 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_7915.2 | 1671 | 8e-25 | 1474 - 1533 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7915.1 | 1682 | 8e-25 | 1485 - 1544 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24564 | 505 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_23909 | 505 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_23909 505 Hv_44K_v2 GCAATCTCAAGGTGAGAGTGAGAGTGTGAGACTCTATTCCTCTTTGTTCTGCTTCTTCAG TTCAAGTTCAGCACTGACAAACTGGCATCATGATCGGCATGCAGGTTGCTGTCGCGGTAC TGATCTCCTGGATGATCTTCCGCAACCCGATCTCCGCCATGAACGCAGTAGGGTGTGGGA TCACGCTCGTCGGCTGCACCTTCTATGGCTATGTGAGGCATCTGATCTCCCAGCAGGCCT CCACCCCTAGCCCGCGCACCCCGAGAAGCCGGTTGGAGATGCTCCCCCTCGTAGGCGAAA AGCAAGAGAAGATCTAGCAGCAGGACATATAGGCGCTCTTGACAATCATAGGAATAATAA ACACACAGCATTTGGGGTTAGAAAGAGCAAAGTTTCGTAGGATACATATTTTGGTGTTGG TAACGATGCTGTACTTGATCCACCAGACTTAATTTTGCTGTTGTTCCATGTCAGTTGCTG CACCCGGTTTGTTCTTCGTGGAACT
Homology of Contig U35_23909 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |