- Probe CUST_11362_PI390587928
- Source Contig U35_11930
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11362_PI390587928 | Hv_44K_v2 | AATCTCCACGGAAAACCAAACCATACTCTGCCACGAGAAGAAAGAAAGATCTCCAATCCG | 38 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.911 | 6.383 | 1.569 | 0.684 | 0.624 | 0.369 |
| Raw | 245.884 | 294.121 | 68.068 | 44.454 | 14.065 | 9.642 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362004 | 2748 | 2e-24 | 71 - 130 | 100 | 60 / 60 | plus | ABC05955 ABC43799 |
| MLOC | MLOC_5350.1 | 662 | 2e-24 | 243 - 302 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_3435.1 | 592 | 8e-25 | 172 - 231 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29696 | 410 | 3e-25 | 39 - 98 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11930 | 554 | 3e-25 | 39 - 98 | 100 | 60 / 60 | plus |
Contig Sequence (554 bp)
>U35_11930 554 Hv_44K_v2 ACACCTCAGCTAGGTGATGGTGGCGTCGTAGGCACCAGAATCTCCACGGAAAACCAAACC ATACTCTGCCACGAGAAGAAAGAAAGATCTCCAATCCGGAGCCGCGAATCCAAGATCCAC ACCACCGCACACCCCACCCTCCCCACGGGCCCCGCCTCCCTCCCTCCCGCCCTTTAATCG CCACCTCCTATTGGATCCCACCAGCCCCGTCACCGTCGTCATCGCTTCGCACTGACCAAT CCATCTGCTCCGGCGCCATGGGCATGGCGAGCAAGCAGCTCCTAGTTCTGCTCCCGTGCC TCGCCCTGCTCTTCGTCGCCGCTGCCGCAGCGGCAGGCGCGGCGCCGCTGTCCACGTACA TCGTGCACCTCGCGCCCGACCACCCGGCGCTGTCCCTCTCCCCCGCGCGCGGCGGCCGCA ACGCGCTGCTCGCGCCCCTCCTCGGCCTCCCGCGCCACCTCAGCGCGCCGCGCCCGCGGC TGGTGAACACCTACGCGCGCGCCGCCACGGGCGTGGCCGCCCGGCTCACGGAGGCGCAAG CCGCGCACGTCGCC
Homology of Contig U35_11930 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |