barSeed - Barley Seed Development Database

Probe CUST_11360_PI390587928

Source Contig U35_11933

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11360_PI390587928	Hv_44K_v2	AGCATAATCGTCAGCGCAGTGCTGGCCCATTTCATCCTGAACGAGAGACTGCACGCGCTA	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71099.3	1395	2e-24	1163 - 1222	100	60 / 60	minus	None
MLOC	MLOC_71099.12	756	2e-24	127 - 186	100	60 / 60	minus	None
MLOC	MLOC_71099.5	1443	2e-24	829 - 888	100	60 / 60	minus	None
MLOC	MLOC_71099.4	1745	2e-24	1163 - 1222	100	60 / 60	minus	None
JLOC1	JLOC1_47218.5	1873	8e-25	575 - 634	100	60 / 60	plus
JLOC1	JLOC1_47218.4	1858	8e-25	557 - 616	100	60 / 60	plus
JLOC1	JLOC1_47218.1	2157	8e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC24292	588	3e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_11933	589	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_11933 589 Hv_44K_v2
GCCCGTACCTCGAGACCATCACTGTATACAGGAGGAGCTGCGCGGTGGCGGTGCCATCCG
ATCCGATCCGGCCGGCCGACCCGCGCCGGAATCAATCGACCCGAGGAGCTCGCGATCGCG
ATCATGAACGGAGGGATGGGGGGAGGAGGCGGAGGCGGGCGGCAGGAGCTGTCGGCGGAC
AACGTTCGGGGGATAGTGCTCGCGCTCCTCTCCAGCGGCTTCATCGGCTCCAGCTTCATC
ATCAAGAAGAAGGGACTCCGCCGCGCCGCCCTCGCCTCCGGCATCAGCGCAGGGGTGGGT
GGGCACTCCTACCTCAAGGAGCCCCTATGGTGGGTCGGCATGATCACCATGATCGTGGGA
GAGATCGCCAATTTCGTGGCCTACGCCTTCGCCCCCGCGGTGCTGGTTACTCCTCTTGGT
GCATTGAGCATAATCGTCAGCGCAGTGCTGGCCCATTTCATCCTGAACGAGAGACTGCAC
GCGCTAGGGGTCCTCGGCTGCGTGATGTGCATCGCGGGGTCGATGGTCATCGTCATCCAC
GCGCCGGTGGAGCAGGAGATCACCTCCGTCAAGGAGATATGGCACATGG

Homology of Contig U35_11933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43790.2	317	1e-69	protein\|DUF803 domain containing, putative, expressed
Brachypodium v1_2	Bradi2g20020.2	357	2e-70
Arabidopsis v10	AT1G34470.1	368	2e-53	Protein of unknown function (DUF803) \| chr1:12604574-12606758 FORWARD LENGTH=368