barSeed - Barley Seed Development Database

Probe CUST_11357_PI390587928

Source Contig U35_11936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11357_PI390587928	Hv_44K_v2	GACGAGGAAATTACCCGTGCACTCTCAGAGCTTTTTTCTAATCTCAAAGAGCTGAAGTGG	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362730	2375	2e-24	1708 - 1767	100	60 / 60	plus	ABC44270
MLOC	AK356097	2110	2e-24	1587 - 1646	100	60 / 60	plus	ABC44270
MLOC	MLOC_6072.2	1518	7e-23	961 - 1020	98	59 / 60	plus	ABC44270
MLOC	MLOC_6072.1	1614	7e-23	979 - 1038	98	59 / 60	plus	ABC44270
JLOC1	JLOC1_3939.1	1627	4e-23	979 - 1038	98	59 / 60	plus
Harvest21	ABC22337	576	1e-24	518 - 576	100	59 / 59	plus
Harvest35	U35_11936	577	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_11936 577 Hv_44K_v2
CGCCCATGGCTGCAAACGGTTGGTTAAGCTGGAGCTTGCGGGTTGCGAGGGCAGCTACGA
CGGCATCGCTGCTGTGGGACGGTGCTGTGCGATGCTGGAGGAGCTCACCATTGCTGAACA
CAGGATGGACGGCGGCTGGCTTGCTGCTCTAGCTTTCTGTGGCAACCTCAAGACTCTGCG
GCTCCAGGGGTGTGCCAGGATTGATGATGATCCTGGGCCCGCCGAACATCTTGGCGCCTG
CCTCACGCTTGAGAGCCTGCAATTGCATCGGTGCCAGCTACGTGACCGCCACGCCCTCCA
TGCTCTCTTTTTGGTCTGCGAGGGTGCTCGCGAGTTGCTCGTCCACAATTGTTGGGGCCT
TGAAGACGACATGTTTGCGTTGGCTGGCCTATGCAGGAGAGTGAAACTCCTGTCCTTGGA
AGGCTGCTCATTAGTAACAACTCGAGGACTCGAATCAGTAGTCACCTCATGGAATGATTT
GCAGAGCCTACAAGTTGTCGCGTGCAATAAAATAAAGGACGAGGAAATTACCCGTGCACT
CTCAGAGCTTTTTTCTAATCTCAAAGAGCTGAAGTGG

Homology of Contig U35_11936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44104.1	501	2e-120	protein\|F-box family protein, putative, expressed
Brachypodium v1_2	Bradi3g50722.1	493	2e-127
Arabidopsis v10	AT5G51380.1	479	7e-80	RNI-like superfamily protein \| chr5:20875945-20877779 FORWARD LENGTH=479