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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11341_PI390587928Hv_44K_v2TAATTAGGTAGAGTGTCCTTCAACAACCGGAGCTTGCACGCAATAGGGAATACTCCAAAC486GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6750.3771.1181.5541.0641.001
Raw 76.30560.918172.474374.82892.01794.282



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_61836.254602e-243395 - 345410060 / 60plus ABC14059
MLOCMLOC_61836.354742e-243491 - 355010060 / 60plus ABC14059
MLOCMLOC_61836.138562e-243491 - 355010060 / 60plus None
MLOCMLOC_61836.518619e-22540 - 59410055 / 55plus ABC14059
MLOCMLOC_61836.614719e-22433 - 48710055 / 55plus ABC14059
MLOCMLOC_61836.419279e-22832 - 88610055 / 55plus ABC14059
JLOC1JLOC1_40431.140255e-222753 - 280710055 / 55plus
Harvest21ABC243056423e-25487 - 54610060 / 60plus
Harvest21ABC164227202e-22364 - 41810055 / 55plus
Harvest35U35_119436423e-25487 - 54610060 / 60plus
Harvest35U35_214297202e-22364 - 41810055 / 55plus



Contig Sequence (642 bp)

>U35_11943 642 Hv_44K_v2
GCTCGGCGAGGGTTTTGTCTCTGCCGTTTCCAGGTTAAAACCCTACCCCCGTCGGGGCTT
CCACCAAGATTCGTTCTCTCTTCTCCGGAGACCGCTGATTCTGCGGTTCTTGGCTGCTGC
GCTGCTCAGAGGAGCGAGAGGGGGGGTTTTGTCAGGCGGCCATGGGCGCGTTCGGCTCCA
AGGAGTGCTCGTCGGGGCGGGAGCACCACCACTGCAGCCATGACCACGGCAAGAGCGCCG
CGGCGGGAGGGAAAAACCGCTTCGCCAAGTTCGGCGACGACTACCACACCCTGGAGCAGG
TGACTGATGCTCTTTCACATGCTGGACTGGAGTCCTCAAATCTAATTGTTGGGATTGATT
TCACAAAGAGCAACGAATGGACAGGTTTTTTCAATGATGAAAGCAACACGTCATGATAAT
TTCACTCCTTATTTCCCCTTTTGTGCTTTCTTCTAAAAATAACTGATGAGTTATGATTGG
TACTTTTAATTAGGTAGAGTGTCCTTCAACAACCGGAGCTTGCACGCAATAGGGAATACT
CCAAACCCATATGAGCAGGCTATATCCATTATCGGGAGAACCCTCGCACGATTCGACGAG
GACAATCTGATACCATGCTTTGGATTCGGTGATGCTACTACT



Homology of Contig U35_11943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None