- Probe CUST_11333_PI390587928
- Source Contig U35_23922
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11333_PI390587928 | Hv_44K_v2 | TTTGGTATCTTCACTGTTAATCTACCTGCTGCAGGGGAGTGCGGGGATGGGGAGTACGGC | 237 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.124 | 0.520 | 1.981 | 2.133 | 1.067 | 1.180 |
| Raw | 16.156 | 109.894 | 357.517 | 594.233 | 108.533 | 129.982 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_31360.1 | 1350 | 2e-24 | 349 - 408 | 100 | 60 / 60 | plus | ABC44582 ABC44863 |
| JLOC1 | JLOC1_20615.1 | 1425 | 8e-25 | 309 - 368 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19509 | 434 | 3e-25 | 238 - 297 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23922 | 436 | 3e-25 | 238 - 297 | 100 | 60 / 60 | plus |
Contig Sequence (436 bp)
>U35_23922 436 Hv_44K_v2 AAAACCACCATGGCGACCTTCTCCAACGAGGAGCTTCTGCAGGCGCACGCCGAGCTCTGG AACCTCACCTTCGGTTACCTCAAGTCCATGGCGCTCGACTGCGCCATCAAGCTCGGTCTC CCAAACGCCATCCACCGATGCAGCGGCGCCGCCACGCTGCCGGACTTGCTCGACGCCATT TCTGTGCCGGAGAGCAAGAAGGCGCACCTGCCTCGCCTCATGAGGTTCCTCGCCGCGTTT GGTATCTTCACTGTTAATCTACCTGCTGCAGGGGAGTGCGGGGATGGGGAGTACGGCCTG ACGCCGATGTCTCGCCTCCTCGTGGACGACGCCGGCGCCAACGGGTCGTGCGGGAGCCTG TCGCCGCTCGTGCTCTCCCAGACAACCAAGTACCACGTGAAAGCGGCCTTGCACCTGCCG GAGTGGTTCATGAGCG
Homology of Contig U35_23922 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g19420.1 | 376 | 2e-55 | protein|O-methyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi4g18065.1 | 354 | 4e-57 | |
| Arabidopsis v10 | None |