barSeed - Barley Seed Development Database

Probe CUST_11331_PI390587928

Source Contig U35_23925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11331_PI390587928	Hv_44K_v2	CACAAGATAGGTCTAAATGGTGTGGATAATGGTGCCCTGAGATTCCGTTCAGTTAGGATA	903	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.635	1.546	1.033	0.700	0.565	0.687
Raw	46.238	37.455	24.657	21.560	6.838	9.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56833.2	2402	2e-24	1360 - 1419	100	60 / 60	minus	ABC09337 ABC09338
MLOC	MLOC_56833.1	2426	2e-24	1389 - 1448	100	60 / 60	minus	ABC09337 ABC09338
MLOC	AK367763	3193	7e-23	1117 - 1176	98	59 / 60	plus	ABC09337 ABC09338
MLOC	MLOC_6299.3	5342	7e-23	1923 - 1982	98	59 / 60	plus	ABC09337 ABC09338 ABC09354 ABC40185
MLOC	MLOC_6299.1	4221	7e-23	427 - 486	98	59 / 60	plus	ABC09337 ABC09338 ABC09354 ABC40185
JLOC1	JLOC1_36795.1	2481	8e-25	986 - 1045	100	60 / 60	plus
JLOC1	JLOC1_4100.1	3676	4e-23	3342 - 3401	98	59 / 60	minus
JLOC1	JLOC1_4099.1	2827	4e-23	427 - 486	98	59 / 60	plus
Harvest21	ABC20109	1031	3e-25	904 - 963	100	60 / 60	plus
Harvest35	U35_23925	1031	3e-25	904 - 963	100	60 / 60	plus

Contig Sequence (1031 bp)

>U35_23925 1031 Hv_44K_v2
ACTCCCGCCCCGGCCCGCACACGTTCCATCTAACACGTCGCCGCCGTCGCCATGGCCACC
ATGTCCCGCTCCGGCTCCGGCTCCGAGGACGAAGACTCCACGCCGGCGATGCGCCGCCTC
CGACGCCTCTCCCTCCACCTCCTACAGCCCTCCGATCGGCCCGCTCCCGAGGGGGCCAAT
TCCCTTGTCCCCGCCGCCTGCGCGGGGAAGCGGCGGGCGGGGGGGCTGGACGCGGACGTG
GCGGCACTCACCTCGTACCTGCGGGGGCGGCACCGGGCGACGCAGGAGCGGTTATACAGG
TTCTTTGTCGAGCGGCCGGAGCTCCATACGCCCGTCGAGCTGCCCATGGCCGCCCACCGC
GAGCTCTGCCTCCGGCAGATGGTAGCGCTCGTTCGAGAGGCCGGGGTGCGCCCGCTCAGC
CTCATGGAAGACGACCCCGCCGAGTACTTCGCCGTCATGGAGGCCGTCGGCGGGCTCGAC
ATCTCCCTCGCCATCAAGGTCGGGGTACAGTACAGTCTTTGGGGTGGTTCTATAATAAAT
TTGGGAACCAAGAAGCACAGGGAAAAGTACTTTGACAAAATCGATAATTTGGATTATCCA
GGCTGTTTTGCTATGACAGAACTGCATCATGGATCCAATGTTCAAGCCCTACAGACCACT
GCTACATTTGATCCAGTTACTGATGAGTTCATTATTGATACACCAAACAATGGAGCCATT
AAGTGGTGGATTGGCAACTCAGCTCTTCATGGAAAATTCGCTACTGTTTTTGCAAGGTTA
ATTTTACCGCTTCAGGGAAAAGGAGGGGAACCTGCTGACATGGGAATTCATGCATTTATT
GTCCCTATGCGGGACCTTGAAACCCATGCTGTTCTTCCTGGAATTGAGATCAATGATTGT
GGGCACAAGATAGGTCTAAATGGTGTGGATAATGGTGCCCTGAGATTCCGTTCAGTTAGG
ATACCCCGTGACAATCTTCTGAACCGATTCGGTGATGTGGCACGAGACGGGAAATACACA
AGCAGTCTCCC

Homology of Contig U35_23925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39220.1	700	2e-170	protein\|acyl-coenzyme A oxidase, putative, expressed
Brachypodium v1_2	Bradi4g14090.1	693	1e-178
Arabidopsis v10	AT5G65110.1	692	4e-141	\| Symbols: ACX2, ATACX2 \| acyl-CoA oxidase 2 \| chr5:26009821-26012482 REVERSE LENGTH=692