barSeed - Barley Seed Development Database

Probe CUST_1131_PI390587928

Source Contig U35_21159

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1131_PI390587928	Hv_44K_v2	CCCACCAGGCAGTAAATTAACTAACTGCGTTGTTGTTTCCCGCACTGTGTGTTCAAAAAA	525	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.524	3.533	1.421	0.678	0.203	0.147
Raw	1770.563	2191.191	767.000	566.113	60.797	48.046

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15799	596	3e-25	526 - 585	100	60 / 60	plus	ABC15799
Harvest35	U35_21159	596	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_21159 596 Hv_44K_v2
CCTCTTCCCACGCGCCTGCATCTCCTCTCCTCTTCTCTCCCTCTCCCCCTCCCCGGCGGC
GGCGGCGGCGGCGATCGATCGCGAGTAGCAATGGCGACAAAGTGCATAATCGGCGCGCTG
GTCGGATCCCTTGGCGTTGCCTACGTGTGCGACACCATCGTTTCTGACAAGAAGATCTTT
GGAGGCACTGTTTGCAAGACCGCCACCGACAAGGAGTGGTTTCAGGCCACCGACGCCAAG
TTCCAAGCCTGGCCTCGCACCGCTGGGCCGCCGGTCATCATGAACCCCATCAGTCGCCAG
AACTTCATCGTCAAGGACCCATGAATGGGCGGCGCGCGGCTCGTCTTGCTCCCACCATGG
GACCCAAAGTTTCTTTTCTAGCTAGGGTTATCAAGTTCCTAATAATAAATAAAAGGGACT
TGAGAGTCAGGGTATACTCTAATGTTTTGCTGCCGTGAGCAACTTTGGGTGGCTTTACCG
CTCGCCCTCTCGTCTCTTGTTGAACTCTGTTCCTTGGTGAAATTTCCCACCAGGCAGTAA
ATTAACTAACTGCGTTGTTGTTTCCCGCACTGTGTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None