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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11317_PI390587928Hv_44K_v2TCACATAACTCAGCCGTGCTGTCCTTGTTTATTATTGGGTGCTTAATTAATTAACTTGTA642GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9491.9261.1230.7410.3270.375
Raw 1002.6431519.840792.285822.611127.390160.981



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_21133.113298e-251157 - 121610060 / 60plus
Harvest35U35_119537213e-25643 - 70210060 / 60plus



Contig Sequence (721 bp)

>U35_11953 721 Hv_44K_v2
ATGCTCAATACCGTGCTAACAGTGAGGGAACACCAAGCCAACTCACATGCGAAGAAAGGT
TGGGAGCAGTTCACTGATGCTGTCATCAAGACAATATCACAAAAGAAATCAGGATTGGTC
TTTATTCTGTGGGGAAACTCAGCCCAAGCAAAGATAAGATTGATTGATGAAACAAAACAT
CACATTCTAAAATCCGCCCATCCGTCAGGCCTGTCTGCAAACAGAGGATTCTTTGGATGC
AGGCACTTTTCGCAGACGAATGAGATCCTGGAGAGGCTCGGGCTATCCACCATCGATTGG
CAGCTCTGAGGAAAACCGCAGGAAGGCACCATGTGACATGTCTGCCCGACTGACTGATAA
CCAGCCACCATTATGATTTTATGGAAGCTGCCTGGTCGTCTTGGTCCATGGTTTTGGTTT
TGGAGGCAACTTGAACTCGGTGCCGCTGCTGGAAGTGAAGTCAAGTGCCGCACTCGGGTC
GGGCCATACCCTATGACGATCTACTACTAGTGCTAGATACGTTATGTACTGCTGGTACCA
AATGTTGGCTCCTCCAAATGGTTTTGGCCGATTCGGTTGTCGTGTATGAGTAGTACGTGC
AACTGCTCTGACGGACGTATAATTGGAGTAGTAGTAGTAGTATCACATAACTCAGCCGTG
CTGTCCTTGTTTATTATTGGGTGCTTAATTAATTAACTTGTACTAAAAAAAAAAAAAAAA
A



Homology of Contig U35_11953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g57730.13045e-61protein|uracil-DNA glycosylase, putative, expressed
Brachypodium v1_2Bradi5g25880.13113e-65
Arabidopsis v10None