barSeed - Barley Seed Development Database

Probe CUST_11315_PI390587928

Source Contig U35_11955

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11315_PI390587928	Hv_44K_v2	TCTCACTCCGAATAGTGATTTATCGAGGAAGCAGCACCCACGTGGCTGGATTTGAAAAAA	215	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.544	1.129	0.514	1.371	1.035	1.194
Raw	20.279	15.428	5.627	28.333	5.659	8.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11893.4	2435	7e-23	2197 - 2253	100	57 / 57	plus	ABC24772
MLOC	MLOC_11893.2	5937	7e-23	5337 - 5393	100	57 / 57	plus	ABC24772
MLOC	MLOC_11893.8	2195	7e-23	2014 - 2070	100	57 / 57	plus	ABC24772
MLOC	MLOC_11893.5	2347	7e-23	2109 - 2165	100	57 / 57	plus	ABC24772
MLOC	MLOC_11893.6	2140	3e-21	2087 - 2140	100	54 / 54	plus	ABC24772
JLOC1	JLOC1_7931.2	2560	4e-23	2085 - 2141	100	57 / 57	plus
JLOC1	JLOC1_7931.1	2696	4e-23	2221 - 2277	100	57 / 57	plus
Harvest21	ABC24772	286	3e-25	216 - 275	100	60 / 60	plus	ABC24772
Harvest35	U35_11955	286	3e-25	216 - 275	100	60 / 60	plus

Contig Sequence (286 bp)

>U35_11955 286 Hv_44K_v2
GGCTTACACGACGCATGGACGGATGATGAAGATGATGATGACGATCAAGAAGTGTTGGTC
AGCCGCTCGTTTTTGCCAAGCTGGGGGTAAAGAGGGAGGGGAGGGGAGAGAAGACGAACG
TGTTCCTCTTTGTATATATAATGGGCCAATTTTGCGTGTGGCCGTTGCAATTGCAGATAA
AAGCTAATCCTTCAGGAGCTGAGTTGATTGTATATTCTCACTCCGAATAGTGATTTATCG
AGGAAGCAGCACCCACGTGGCTGGATTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_11955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None