barSeed - Barley Seed Development Database

Probe CUST_11312_PI390587928

Source Contig U35_23931

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11312_PI390587928	Hv_44K_v2	ATGAAGATTGCATGCCCTCCACTAAACTATGTTTAGCTCTGTTCATTGAAGCTAATGTCA	614	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.350	1.325	1.083	1.079	0.713	0.762
Raw	85.061	134.715	93.152	146.050	33.284	39.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70470.2	3165	2e-24	2549 - 2608	100	60 / 60	plus	ABC21576
JLOC1	JLOC1_46765.3	1739	8e-25	1426 - 1485	100	60 / 60	plus
JLOC1	JLOC1_46765.2	1768	8e-25	1455 - 1514	100	60 / 60	plus
JLOC1	JLOC1_46765.1	1895	8e-25	1582 - 1641	100	60 / 60	plus
Harvest21	ABC21576	641	3e-25	29 - 88	100	60 / 60	minus	ABC21576
Harvest35	U35_23931	702	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_23931 702 Hv_44K_v2
GCAGTGTTTTACCAGAAGATGTTAGCAGCCCACATGCACATCATAGTCCGCGGATGGAGG
TTCCAAGCATGGATCAACCATAAGGTCATGGCGGTGAAAACTTGACATCTGAAATTCCTG
GAGTGCTGTTTCAGTGATAACTCACAACGTAGCAGCAAATACTGATTTCAAAATTGAAAG
ATCAGGGCAGCAAGTTTAGACTGATCACCGTTCTGAATTTGTTGTTTGTTGTGGAGACTG
TTGGTGCTAACTAACCTATCAGTCTGCTGCCCTGTTTGTTCTGGAGACTGTTTGTGCCAA
CTAACTCATCAGCCTGCTGCCCTGTTTGTTTTGGCACCCGTCCTTCAGTTGAAAAGGCGC
CCATGTGCATATTGCACCGTGAATTCGGACCACTATGAACATTCCGGTGTCTGTTTTATT
TAATTTCTAATTGAGTATATTTTGCAAGGCAATAGTGGCTTTGTAGCTCTCTTGGGAATT
ATTACCAATCTTTTTGAGCAAAAACAGTAGGCAAGTCCCCTATTGTGACTCTTTTTCATG
ATATAAATGGAGGTTATACAAAAGGGTAATACAAGTGGAGTTGGGTGAGACAAGGGCATG
TCACAAATGTTCTAATGAAGATTGCATGCCCTCCACTAAACTATGTTTAGCTCTGTTCAT
TGAAGCTAATGTCACTANAGTATAGTACCCAGCAATAAGAAC

Homology of Contig U35_23931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None