barSeed - Barley Seed Development Database

Probe CUST_1129_PI390587928

Source Contig U35_33132

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1129_PI390587928	Hv_44K_v2	ATGTATCCCCATTGATCATATCGAATTGCATATGCGAGTGCTCCCACGGTGGCAAATAAA	66	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.896	5.221	1.317	0.866	0.577	0.567
Raw	73.810	101.245	23.206	23.787	4.182	4.784

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3638.1	1257	2e-24	26 - 85	100	60 / 60	minus	None
MLOC	MLOC_3638.2	2207	2e-24	26 - 85	100	60 / 60	minus	None
JLOC1	JLOC1_2185.1	2237	8e-25	2118 - 2177	100	60 / 60	plus
Harvest35	U35_33132	626	3e-25	67 - 126	100	60 / 60	minus

Contig Sequence (626 bp)

>U35_33132 626 Hv_44K_v2
ACTCCTATAGGGCGAATTGGGCCTTCCAGATGATGCTCGAGCGGCCGCTAATAAAACGGA
GCACCCTTTATTTGCCACCGTGGGAGCACTCGCATATGCAATTCGATATGATCAATGGGG
ATACATGGTTAAGGCGGCTTAAACTAGGATCAGAACAAATAATAGGGAACTGCATGCTGC
TACAACAGGCCTTTAAAGGCAGTACATACATCGCTACGCATTGTGTGCATGCTCTCCGTA
GCCCCACAGTGTCAAATGTTGACAGCATTCCAGGGTCTACGCAAGAGGCATATATACCAA
TGCACCCTTTCCTCCAGCGGCCGCTCAACCATGTATTTTGAATCATCGACCATCCAGTGG
GTGGCAGGCAGAGAGACAAGGTGAACTCTCTTAACCCAAGACAATGCTACAACATAGGCT
TGCTCATGGTGTAAACAGAAAAGGTTACATGGGACGCCCTCAAATGCATCCATATACAAC
ATTACATATAACTACAAAATGAACTAACACTATGATCTGACGTCCTTGAAAACACCACCT
CTCTCCATCTCCGCAACAATCTCTTTCAAGGCAGGTACTTTGCTAGCTAACGTTCTGTAC
AGTCTAGAATACCTGGCTCTTGTGCC

Homology of Contig U35_33132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None