barSeed - Barley Seed Development Database

Probe CUST_11299_PI390587928

Source Contig U35_35916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11299_PI390587928	Hv_44K_v2	GTTTTCAGGTATGCTAGCATTCAGATGTACTTTCGACACCAGATAGCACATCAACAGTAG	41	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40228.5	1215	3e-22	739 - 794	100	56 / 56	minus	ABC23394 ABC46801
MLOC	MLOC_40228.1	712	3e-22	230 - 285	100	56 / 56	minus	ABC23394 ABC46801
JLOC1	JLOC1_26284.1	1202	1e-22	741 - 796	100	56 / 56	minus
Harvest21	ABC46801	511	5e-23	199 - 254	100	56 / 56	minus	ABC46801
Harvest35	U35_35916	449	3e-25	42 - 101	100	60 / 60	minus
Harvest35	U35_46553	511	5e-23	199 - 254	100	56 / 56	minus

Contig Sequence (449 bp)

>U35_35916 449 Hv_44K_v2
GGCGAATTGGGCCCTCCCGAAGATGCTCGAGCGGCCGCTATCTACTGTTGATGTGCTATC
TGGTGTCGAAAGTACATCTGAATGCTAGCATACCTGAAAACTATGCCAACATTTTTTCCT
ATCTGGACCTTCTTTAAGTAACTAAGTATTTTCCGGATAACAACTTTGCTTTAGCTCAAA
ATTGATCAACCGTTGTGCCAACAAATAGAGCTACAGAAATCAGTAAAGTATGTACTCATA
TACTCCTAGATTCTTGTGATTCGAACAATAAACTTCCAACGACAGGACTGCCTCTCACGT
CCTCTAGCAGCAGGACTCCATCACTTAAATCCTACTCATCAAGCAAGGGACCTCTCTGAC
TTTCTGGTTTGTGGTCATAACGCCTCAAAAGCTGAAGGCATGTTGAAGTGATCAGCTTAG
TTGACATATATGTCTCCCATGGAATGTCC

Homology of Contig U35_35916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None