barSeed - Barley Seed Development Database

Probe CUST_11296_PI390587928

Source Contig U35_11961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11296_PI390587928	Hv_44K_v2	GCGTCCTGATCTACCACAAGAATCTCAAGGACTACCCGTTCCGGAGCATCCTCTTCTTCG	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63433.3	1027	2e-24	301 - 360	100	60 / 60	plus	None
MLOC	MLOC_63433.2	1466	2e-24	636 - 695	100	60 / 60	plus	ABC42904
MLOC	MLOC_63433.1	2098	2e-24	1266 - 1325	100	60 / 60	plus	ABC42904
JLOC1	JLOC1_41549.1	1650	8e-25	588 - 647	100	60 / 60	plus
Harvest21	ABC24069	448	3e-25	58 - 117	100	60 / 60	plus
Harvest35	U35_11961	448	3e-25	58 - 117	100	60 / 60	plus

Contig Sequence (448 bp)

>U35_11961 448 Hv_44K_v2
TTTCACAGGAATTCGTGGGGATGGTGCACGCCGTCGGCGCAGTGGCGTCCATGGTGGGCG
TCCTGATCTACCACAAGAATCTCAAGGACTACCCGTTCCGGAGCATCCTCTTCTTCGCCC
AGCTCCTGCACGGCGCCTCCGGCCTCCTCGACCTCACCTTCGTGCTCCGGTGGAACCTCG
CGCTCGGCGTCCCGGACGCGGTCTTCGTCACCCTGGAGGAGTGCGTCTCCCGGGTGGTCG
GCCGCGTCCGGCTGATGCCGATGATGGTCCTGAGCACCAAGCTCTGCCCGCCGGGCGCCG
AGGGCACCTTCTTCGCGCTGCTCATGTGCATCGACAGCCTCGGCATGCTGGTGGCCAAGA
CCGCCGGCGCCTTCGTGCTCCGCGCCCTGCACGTGACCAGGACGGATTTCAGCAACCTCT
GGCTCGCCGTGCTGCTGAAGAACCTGCT

Homology of Contig U35_11961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25560.1	505	8e-84	protein\|BT1 family protein, putative, expressed
Brachypodium v1_2	Bradi4g30580.1	502	2e-88
Arabidopsis v10	AT5G10820.1	503	2e-61	Major facilitator superfamily protein \| chr5:3420876-3423166 REVERSE LENGTH=503