- Probe CUST_11295_PI390587928
- Source Contig U35_11963
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11295_PI390587928 | Hv_44K_v2 | CAAACTTTTATGTCTAGCTTCAAAGCTATCTCTAGCACTAGACCGAGGAAATATTAATGT | 186 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.736 | 1.582 | 1.320 | 0.924 | 0.278 | 0.226 |
| Raw | 1606.223 | 2372.310 | 1665.550 | 1842.242 | 196.658 | 169.867 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53327.1 | 1798 | 7e-23 | 1496 - 1555 | 98 | 59 / 60 | plus | ABC15564 ABC44131 ABC44152 |
| JLOC1 | JLOC1_34254.1 | 1563 | 4e-23 | 1460 - 1519 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC44131 | 241 | 3e-25 | 34 - 93 | 100 | 60 / 60 | minus | ABC44131 |
| Harvest21 | ABC15564 | 884 | 1e-23 | 770 - 829 | 98 | 59 / 60 | plus | ABC15564 |
| Harvest21 | ABC44152 | 309 | 6e-22 | 64 - 123 | 97 | 58 / 60 | minus | ABC44152 |
| Harvest35 | U35_11963 | 310 | 3e-25 | 187 - 246 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7910 | 884 | 1e-23 | 770 - 829 | 98 | 59 / 60 | plus |
Contig Sequence (310 bp)
>U35_11963 310 Hv_44K_v2 AAGGAGAAGGGTAAGAAGGCAAAGGGTGCTAAATTGAAGGGGAAGGAGGATGGTACAAAG CGGAAGCGTGAGGATGACCCAGAGGGTAAGGATGGGAAGAAGCCCAAGAAGGAAGGGGAA GAGAAGGCCCCAGATATCATGTATGGCAATGTGTTTTCATTGAGCTTAGATTAAATTGTT GAGGAACAAACTTTTATGTCTAGCTTCAAAGCTATCTCTAGCACTAGACCGAGGAAATAT TAATGTTTTTTTATGTCCCCTCGCCCGAGGAAATGCTAATGATGCTTCAATGGAAAAAAA AAAAAAAAAA
Homology of Contig U35_11963 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |