- Probe CUST_11290_PI390587928
- Source Contig U35_11968
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_11290_PI390587928 | Hv_44K_v2 | GCCGCGCAGCGCCTTAGCGCCTCCCTCGCGATCCTCGGCGGGACGCACCTCGCCGCGGGA | 306 | GeneList: lightcyan MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.052 | 1.181 | 1.802 | 1.386 | 0.705 | 0.632 |
Raw | 108.563 | 191.218 | 256.090 | 301.672 | 55.950 | 53.213 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK356141 | 1007 | 2e-24 | 356 - 415 | 100 | 60 / 60 | plus | ABC33502 |
MLOC | MLOC_37587.1 | 677 | 7e-23 | 30 - 89 | 98 | 59 / 60 | plus | ABC33502 |
JLOC1 | JLOC1_24346.1 | 848 | 2e-21 | 1 - 57 | 98 | 56 / 57 | plus | |
Harvest21 | ABC22664 | 510 | 3e-25 | 307 - 366 | 100 | 60 / 60 | plus | |
Harvest35 | U35_11968 | 510 | 3e-25 | 307 - 366 | 100 | 60 / 60 | plus |
Contig Sequence (510 bp)
>U35_11968 510 Hv_44K_v2 GTGGCGATCTGCCACCTCACCCGCCGCCTCCTGAGCCCCTCGACCGCCACCGCCAAGCTC TTTCCCGGCACGAGCTTCTCGAATCCACACGCCTATGCGCGAAACCCCCTCCTCCTACTC GACCCCCACCGCCGCTTCTCCACGAGCCCAAACACCACCCCCAACCCCGACGCTTCCCCC GCTCCCGATCCCGAACCCACTTCCCTGGAGTCGATGAAGCACCAGGAGATCGAGGGCCCC ACGGTGGAGCGCGACACGTCACCGCTCGCCGACGAGGCGCGGGCGGAGCTCGACGCCCTC CGCCGCGCCGCGCAGCGCCTTAGCGCCTCCCTCGCGATCCTCGGCGGGACGCACCTCGCC GCGGGAGCGTGGATCGCCTCCGGGGCCGCGCCCGTCGGGGTCGAGTCGGCCGCGTTGGTG CAGGGCTGTTTTCGTGTCGCGTTCCCCTTCACGGACGCTCTTGTGCTGCGGGGTGTCATC AAGCCCCCCCCCTTCTTCCAGAAGATGGAG
Homology of Contig U35_11968 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi3g53480.1 | 220 | 3e-52 | |
Arabidopsis v10 | None |