barSeed - Barley Seed Development Database

Probe CUST_11279_PI390587928

Source Contig U35_5746

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11279_PI390587928	Hv_44K_v2	ACTTGGACGAAACGGTTTCGTTCTTTGGGGGAAAGAGTCGTTTACTTATTCTTCTCTAAA	826	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.666	1.830	1.122	0.821	0.393	0.442
Raw	804.029	1355.035	747.903	845.522	145.222	176.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363503	2977	2e-23	2764 - 2821	100	58 / 58	plus	ABC14562 ABC26678 ABC38182
MLOC	MLOC_357.1	1063	2e-23	848 - 905	100	58 / 58	plus	ABC14562 ABC38182
JLOC1	JLOC1_227.1	1125	1e-23	848 - 905	100	58 / 58	plus
Harvest21	ABC14562	708	4e-24	48 - 105	100	58 / 58	minus	ABC14562
Harvest35	U35_5746	931	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_5746 931 Hv_44K_v2
CTTGGATTCCAGAGCTGGCCAGAATGCCAGGGGAATGGATCCACCATCCATGGGATGCAC
CGAGCTCTATACTAGAAGTTGCTGGTGTTGAGCTAGGCTTTAACTATCCTATGCCCATAG
TAGAGCTTCACATGGCTCGCGAGTGCTTAGATGATGCCATCTCCACGATGTGGCAATTGG
ATACAGCCGAAAAACTTGCGGAATTAGATGGTGAGGTTGTTGAAGACAACTTGAGCCATA
TCAAGAGTTTTGATCTCCCAAAAGTTGTTTTGAAGGAACTATCTCCAAGTGCTCCTCACT
GTGATCAAAAAGTGCCCACTGATGATGGCAGGAATCTTGAGTTACAACCTAAGGAACTGA
CGGGCTTAAATAAACAGACCATTTGTGTTGATGTGATCAAGGCCTCAAAGATGGAAGACA
CAGGCTCCATAGTAAATTCTCCGATATCAAGGAAAAGATCCAGCAGCGGGAGTGTGTTTG
ATGTCCCATCTTGTTCGTCTTCAGTCGAAGTGCGCTCCCAGAATCAACGTCCTGGTGGTT
ATTTTGTTGGGTCATCAAAATACATCCTGCAGAAAGCAGAGAGGAACTGTTTTGATAAGG
CAGAAGACGATGACAGTGCCCACAGTGGTACAAACACCTCGAGAGCATCCAAGAGACCTG
CCGCCTCACAAGGGTGATCGTGAAGACTGTACGGCTGAACAATGGAGTGGACAAGCGCCG
CACTAGGATCTTCCTGCATCCCGTTCTCATTATAAGAAAATTTTGTACATTTCGTTATCT
GGTTATTTTTGTCAAATCTGTTATGTAACCTATAATTAGCTGCAACACTTGGACGAAACG
GTTTCGTTCTTTGGGGGAAAGAGTCGTTTACTTATTCTTCTCTAAAAAAAAAAAAAAAGT
TTCAGATTCAAAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_5746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41550.2	652	6e-84	protein\|FAD binding domain of DNA photolyase domain containing protein, expressed
Brachypodium v1_2	Bradi3g49204.1	637	1e-99
Arabidopsis v10	None