barSeed - Barley Seed Development Database

Probe CUST_11269_PI390587928

Source Contig U35_5756

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11269_PI390587928	Hv_44K_v2	AATTCAACATTTCTCTCCGCTCTTTAATCAGTCGTCGGAGAAGAAGAGGAAGGGGTCGAT	60	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65248.1	1524	7e-23	231 - 290	98	59 / 60	plus	ABC24681
JLOC1	JLOC1_42924.3	1410	4e-23	76 - 135	98	59 / 60	plus
JLOC1	JLOC1_42924.2	1394	4e-23	84 - 143	98	59 / 60	plus
JLOC1	JLOC1_42924.1	1452	4e-23	106 - 165	98	59 / 60	plus
Harvest21	ABC14954	760	3e-25	29 - 88	100	60 / 60	plus
Harvest35	U35_5756	792	3e-25	61 - 120	100	60 / 60	plus

Contig Sequence (792 bp)

>U35_5756 792 Hv_44K_v2
TCGAGCACTGTTGGCCCTGGATTCTCCTCGCCTCGCTTGCCTCCCGGCCCGCCTCGCACA
AATTCAACATTTCTCTCCGCTCTTTAATCAGTCGTCGGAGAAGAAGAGGAAGGGGTCGAT
GACGAGCAAGTCCGGCAGCGGCGCCGCGGAGGATGGCAGCTACGAGTACGAGGAGGAGTC
GGTGCAGAACGCCCGCGGGATGAAGCTCTTCACCTGCAGATGGCTCCCCCCCAAGGGCCA
GATAGTCAAGGCCCACGTTTTCCTCTGCCATGGGTATGCGGTGGAGTGCAGCGTGACGAT
GCGGGGGACGGGGGTGCGGCTGGCGCAGGCCGGGTACGCCGTGTACGGGGTGGACTTCGA
GGGCCACGGCAGGTCGGAGGGGCTCCAGGGCTACGTCCCCTCCTTCGACGTCCTCGTCGC
CGACACCGACGCCTTCTTCGCCGCCGTCGTCGCCTCCACCGCCAACACGGACCTCCCCCG
CTTCTTGCTCGGCGAGTCCATGGGCGGCGCCGTCGCGCTGCTCCTCCACCGGATGCGCCC
GTCCTACTGGACCGGCGCCGTCCTCGTCGCCCCCATGTGCAAGATCGCTGATGAGATGCG
GCCGCATCCGGTGGTGGTGAGCGTCCTCAAGCTGATGACCAACATCATTCCCACGTGGAA
GATCGTGCCGACCACCGACGTCATCGACGCCGCCTACAGGATGCAGGAGAAGCGCGATGA
GATCAGGAACAACCCCCACTGCTACCAGGGCAAGCCGCGGCTCAAGACCGCCTACGAGCT
CCTCAGGGTCAG

Homology of Contig U35_5756 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01030.1	333	5e-97	protein\|monoglyceride lipase, putative, expressed
Brachypodium v1_2	Bradi4g45360.1	338	1e-119
Arabidopsis v10	AT2G39420.1	317	4e-84	alpha/beta-Hydrolases superfamily protein \| chr2:16460442-16462872 FORWARD LENGTH=317