barSeed - Barley Seed Development Database

Probe CUST_11268_PI390587928

Source Contig U35_5757

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11268_PI390587928	Hv_44K_v2	GGCCTAAGGCATATGCTCATATCCTTTTCATTATCTTTGATATTACAACACATTTTCCAG	747	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.154	0.240	1.398	2.813	1.192	1.283
Raw	2.739	10.649	64.328	209.322	30.569	35.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60022.1	2353	2e-24	100 - 159	100	60 / 60	minus	ABC14651
JLOC1	JLOC1_39111.2	2176	8e-25	1942 - 2001	100	60 / 60	plus
JLOC1	JLOC1_39111.1	1383	8e-25	1149 - 1208	100	60 / 60	plus
Harvest21	ABC14651	829	3e-25	748 - 807	100	60 / 60	plus	ABC14651
Harvest35	U35_5757	902	3e-25	748 - 807	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_5757 902 Hv_44K_v2
ATCGACGGGCGGGTCAAGTGGGCCATCAACAACGTCTCCTTCACGCTGCCGCACACGCCC
TACCTGGTGGCCCTGAAGCGCCGCCTCCGGGGCGCCTTCGACGAGCGCCCGCCGCCGGAG
ACGTACAACCACACGGGCTACGACGTGTACGGCGTGCAGGCGAACCCCAACGCCACCACC
AGCGACGGGCTGTACCGGCTGGCGTTCGGCTCCGTGGTGGACGTGGTGCTGCAGAACGCC
AACATGCTGGCGCCCAACAACAGCGAGACCCACCCGTGGCACCTCCACGGCCACGACTTC
TGGACGCTCGGGTACGGCGTGGGGCGGTTCGACCCGGCGGCGCACCCGCCGGCGTTCAAC
CTGAGGGATCCCGTGATGAAGAACACGGTGGCGGTGCACCCCTACGGCTGGACGGCGCTG
CGGTTCCGGGCCGACAACCCCGGCGTCTGGGCCTTCCACTGCCACATCGAGGCGCACTTC
TTCATGGGCATGGGCGTCGCCTTCGAGGAGGGCATCGAGCGCGTCGGCAAGCTCCCGGAG
GAGATCACGCGCTGCGTCAGCAAAAAGGGCGGCCAACACTGAGCCGTGAAATACTAAAAC
GTGCGAGAAAATATTGAATGCTGCGATCTATGCTAGATTGCTCACATAATTTCATTCATT
CTTCACATTCAATTATTTATTTTCGCAGACATTCACGGTAGAAATCCTATCCTCTAATTC
CTTATATTTTTCCTTTGGTTCAAACAGGGCCTAAGGCATATGCTCATATCCTTTTCATTA
TCTTTGATATTACAACACATTTTCCAGTGAGCAAATTGTTGGACTATTAATCATGTATGT
ACAAATAATTAAGTATACCCAATCCGCAAGATACAAGATTAATATAAAAAAAAAAAAAAA
AA

Homology of Contig U35_5757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20090.1	578	1e-110	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g28950.1	577	1e-127
Arabidopsis v10	AT4G39830.1	582	7e-82	Cupredoxin superfamily protein \| chr4:18479103-18481184 FORWARD LENGTH=582