barSeed - Barley Seed Development Database

Probe CUST_11263_PI390587928

Source Contig U35_5762

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11263_PI390587928	Hv_44K_v2	ATTCCCTGATGTACCGTTACAGAAACATTTGTATATCATAGTAATGTTTCAGGGTATGTG	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361911	3703	2e-24	3603 - 3662	100	60 / 60	plus	ABC18383
JLOC1	JLOC1_11103.2	2957	4e-23	2774 - 2833	98	59 / 60	plus
JLOC1	JLOC1_11103.1	3444	4e-23	3261 - 3320	98	59 / 60	plus
Harvest21	ABC18383	615	2e-21	544 - 599	98	55 / 56	plus	ABC18383
Harvest35	U35_5762	628	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_5762 628 Hv_44K_v2
GGGGAATAACCAGACTCCTTTTGCTACGGCCTCACCATTTGGCTTTCAGAGCAATTCACT
GTCAACTCAAGCTTTCAGCATGCCAGCTTCTCAATTCGCTTCCACTTCAACCACCTCACC
TGGCATTTTCCAGTTTGGCCAGCAGAGTCAAGCTTCTTCAGGTGTTTTTTCAGTGGGCAC
TGTCCGTGACAATGACAAGTCTGGCAGAAGAATTGTCAAGGTAAAGAGAAAGAAATAGGC
TACTCTGTTCAAAGTTGATCAAGAGGTTCAGAACTTGCAGTCAATTTGGGCTGTAAAGAA
ATAGGCCACTCTGTTCAAACTTGATCAGAGGTTCAGACCTTGCAGTTAATTTGGCATGTG
GACTAGCCTATGCAAATTGATCTTGGCTTCCAGGGCTTCTGGTGATCGGCGAGTGTAGTG
CAGCATATTTGTTCACTTGATACCGACTGAGCTGGCATGAGATGCCCGTGGTTTTTTGGC
ACAGTACCTATGGTGGACTCTCTCTAGTCTATTTTTGTTGATTAAGTAAACTGAATTTTG
TCTATTCCCTGATGTACCGTTACAGAAACATTTGTATATCATAGTAATGTTTCAGGGTAT
GTGTTTTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None