barSeed - Barley Seed Development Database

Probe CUST_11262_PI390587928

Source Contig U35_5763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11262_PI390587928	Hv_44K_v2	TACTCGTGATGATAGTAATTAATTTCAGTGAGCTGCTGCTTGCTGAACTATTGGTTGAAA	853	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.047	1.363	1.492	1.259	0.541	0.486
Raw	628.581	1324.660	1218.895	1610.099	245.256	237.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16088.1	775	7e-23	625 - 681	100	57 / 57	plus	ABC17507
JLOC1	JLOC1_11061.1	744	4e-23	625 - 681	100	57 / 57	plus
Harvest21	ABC17507	889	3e-25	12 - 71	100	60 / 60	minus	ABC17507
Harvest35	U35_5763	924	3e-25	854 - 913	100	60 / 60	plus

Contig Sequence (924 bp)

>U35_5763 924 Hv_44K_v2
ACAACCTCAGCCGCAAGTGCATCCTCAATCACAGCAGCGCCTGCAACCTCAACTGCAGCC
GTATACTCAGGCTCAACCACAGCAGCCCCTGCAACCTCAACTGCAGCCGTATACTCAGGC
TCAACCACAGCAGCCCCTGCAACCTCAACTGCAGCCGTATACTCAGGCTCAACCACAGCA
GCCCCTGCAACCTCAACTGCAGCCATATACTCAGGCTCAACCACAGCAACCCCTGCAACC
TCCACTGCAGCTGTATACTCAGCCTCAACCACAGCAACCCCTGCAACCTCAATCCTCAGA
CTCAACCACAGCAACCTGTGCAATCTCAACTGCAGCTCCATCTGCGGCCGGCACCACTGC
TGCTGCAACCTCAGCCCCAGCAATCCCTGCAATCTTAACTGCAGCTCCATCAGCAACCAC
ATCAGCCGACGCAAGTGCCGCCACTGCCCCAACCTCAACCCCAGCTACATCAACTGCAGC
AACCCCAGCCCCAGCCCCAGCCCCAGCCGCCAACACAGCTGCAAGCGGAACATGGCCTGG
ACTGGACAGTTAGCGATTTGGGACATGTAGCCTCAGTATCAGTTAAAATTGACGTACTTC
TGCTGGCAACAACTAGGCCTCTGCCACCAGTAAAATTGTGCGTTAGGTTTGTCTGCATCT
TGTACAATGTAAATCGAGTGTGATTTCAGCCACCGTGCCTTCAATAATCTGAACCTCTCT
AGTAACTGGTGTACTTATTGTAGTACTGGATGCTGTGCTTGTGACTGCTGTAGTTTCATG
GTATCGTGTCGTGTGTGCCGTGTCAGAAGCTACTACATTATTACCAGTGTAATCAATTGC
CTAACTCAGTATTTACTCGTGATGATAGTAATTAATTTCAGTGAGCTGCTGCTTGCTGAA
CTATTGGTTGAAAAAAAAAAAAAA

Homology of Contig U35_5763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None