barSeed - Barley Seed Development Database

Probe CUST_11261_PI390587928

Source Contig U35_5764

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11261_PI390587928	Hv_44K_v2	CATCCAGCAAGAATCATCTTTATCCAAATCACTGATGATTATTTGCTTTGCGCTGAAAAA	709	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.400	2.701	1.229	0.786	0.901	0.802
Raw	18.782	32.828	13.653	12.469	2.792	2.764

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52585.4	1203	7e-23	1096 - 1156	98	60 / 61	plus	ABC13174
MLOC	MLOC_52585.1	2498	7e-23	2391 - 2451	98	60 / 61	plus	ABC13174
MLOC	MLOC_52585.2	2210	7e-23	2103 - 2163	98	60 / 61	plus	ABC13174
JLOC1	JLOC1_33710.1	967	4e-23	860 - 920	98	60 / 61	plus
Harvest21	ABC13174	780	3e-25	12 - 71	100	60 / 60	minus	ABC13174
Harvest35	U35_5764	780	3e-25	710 - 769	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_5764 780 Hv_44K_v2
ATTCATGTATGAAGTCTAGGACAGTAAGACATGAACAGGCGTAACAGTTAATCAGATCTA
ACATGTTACACGGGATTACTATCATTTAGTATATTTGGATTAAATGTCAGTTCAGTGTTT
TAAAAAACATTTCCTGAAACAGCTCTGTCAACATGAGCTGCTTCAGATGATAAATTTGCT
TGTTTTCAGCAGACTAATTTATTTTATTTTATTATCACCTCTGAGAATCAGGAAGCTGGC
AGCAAATATTATGTGGAAACAGAACCACCTAATGCAATTGAGATCGAGCCAGTGAATGGA
TCTCTAAACTCAGACGGGCAGGCGTCACTCAAGTTTAAAAGGACATCGTCATCATCATCA
ATGGGAAGGATCAACTGCAAGGTTTACTACTGCAAAGAAGATGAAGTTTGTCTTTACCAA
TCTGTGGCTTTTGATGTCAAATTCCAAGAGGGAGTACCCAGCCCTGCACCAATTACTCTA
GCCTATACTGTGGTGCCAAGAGATAATTCAGGTAGTTCGCAGTTAATGGCTGCTGCTAAG
AACTTATAAGGTATAGTTAGATCCAGGGTGGTTGCGTACCGTGCATTCTTGTCCTGAATG
TGAATTTGTCTCTAGTTTATGTTGCGTGGCTGACGGACACCGAGCGTGATTAGTTATATA
ATATTGCCAGTCCATTGATTGTTTGAACACCCATATGGAGTCCATTTGTCATCCAGCAAG
AATCATCTTTATCCAAATCACTGATGATTATTTGCTTTGCGCTGAAAAAAAAAAAAAAAA

Homology of Contig U35_5764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None