barSeed - Barley Seed Development Database

Probe CUST_11254_PI390587928

Source Contig U35_5772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11254_PI390587928	Hv_44K_v2	CAGCTACAGATGCAAGTTGAAGTTGATGACACTTTCCTTGTTAAAATATACGTAGGAAAT	696	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.240	0.733	1.000	1.367	1.023	1.446
Raw	69.620	359.504	403.363	891.857	226.770	350.284

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374526	2839	2e-24	2451 - 2510	100	60 / 60	plus	ABC11867 ABC40331
JLOC1	JLOC1_19920.1	831	8e-25	627 - 686	100	60 / 60	plus
Harvest21	ABC11868	618	3e-25	538 - 597	100	60 / 60	plus
Harvest35	U35_5772	777	3e-25	697 - 756	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_5772 777 Hv_44K_v2
CTGCACTGGCACGCTCAAGTTCGCGCACCGGAAGTGCATACAGAGGTGGTGCGACAAGAA
GGGGAACATCACATGCGAAATCTGCAACCAGGTTTACTCTCCGAACTATGTTCTCCCTCC
AACCAAGTGTTGTTCAGATGAAATGGGCATGGATCTTAGGCCAAGCTGGGTTGGACGAAT
TGATCCCCATGACTCCCATTTCCTAGCGATCGCCATCGCGGAGCAGCAGCTGCTGAACGC
TGAATTTGATGACTGCATGACCTCAAATTCAAGTGGCGCCACATGCTGCCGGTCTATTGC
TCTAATTCTGATGGTCCTTTTGCTCATCCGCCATGTAATCGTGATCGTGCGAGATGTTAG
CATGCTACAAGATGCGACGGTGCTGTTCAGCGCGATTCTTCAGTTCGCGGGGTTCTTCCT
TCCGTGTTACGTCATAGCGCGCTCCTGCTATGCTTTTCAACACCGGAGGCGAAGACAGGT
TTAGGGGCATTACCTGAACCCGGAACCGTACTCTGCCGCGCAAACCGGACCCCGTCTTCG
GAAGAGAAAGGCGGCGAAGCTTGCGAAGCGAATTTCCCCTTGGCCCAAGCGAATCATGGA
GGAAAAATTGTAGGCGAAAATTAGATTGGATTGTGGTGGACGGAGTAGCCGCAACGGCAC
CCGTCGAGCTCAACTGTACATATGAGAGCCAGTTTACAGCTACAGATGCAAGTTGAAGTT
GATGACACTTTCCTTGTTAAAATATACGTAGGAAATATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66970.3	220	6e-92	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g57520.2	213	6e-92
Arabidopsis v10	None