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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11253_PI390587928Hv_44K_v2TATGAGACTGTATGCCGTCTTCATTCTTGTATTCCCCGTGTTTGGTGCCATAGTCTCTGA672GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2981.5881.1840.8580.3680.300
Raw 39.21274.57249.56561.5407.3987.369



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56391.18697e-23702 - 7629860 / 61plus None
MLOCMLOC_56391.239957e-2342 - 1029860 / 61minus None
MLOCMLOC_56391.332517e-2342 - 1029860 / 61minus None
JLOC1JLOC1_36466.110104e-23784 - 8449860 / 61plus
Harvest21ABC123857393e-25673 - 73210060 / 60plus
Harvest35U35_57737393e-25673 - 73210060 / 60plus



Contig Sequence (739 bp)

>U35_5773 739 Hv_44K_v2
GCGGCTGCACATCCCCCCTCCCTTCCTTCCTCTTCCCCTCGCCACACCCCTGTTTGCTTC
TCAACCCAAGAAAGGAGGGAAGGAAACAAGAGAAGGCATCAACCATGTCGAATTCCGCGT
CAGGAATGGCTGTTTGCGACGAATGCAAACTCAAGTTCCAGGAACTCAAGGCGAAGAGGA
GCTTCCGCTTCATCGTGTTCAAGATCAATGAGAAGGTGCAGCAGGTGGTGGTGGACAGGG
TCGGGGAAAAAAACGAGAGCTACGATGATTTCGCTGCCTGCTTGCCTGCTGACGAGTGCC
GCTATGCGGTATTTGATTTTGACTTCGTCACTGATGAGAACTGCCAGAAGAGCAAGATCT
TCTTCATCTCTTGGGCTCCTGACACATCCAGGGTGAGGAGCAAGATGCTGTACGCGAGCT
CCAAGGACCGCTTCAAGAGGGAGCTGGACGGCATCCAGGTGGAGCTACAGGCGACTGACC
CGAGCGAGATGAGCATGGACATCGTAAAGGCGCGAGCCCTCTGAAGAAGAGAAAACCCGA
GCCCGGCTACTTACTACGTACACCCACACCCGCACCCACCCCTGGAGCAGGAGCACCGGT
TCCTGTTCTTGCAGTTCCTCACCATCCATTTTCCCTGCCATTCTTTTCCTGGAAGCAAAG
TGTTGTGTTCTGTATGAGACTGTATGCCGTCTTCATTCTTGTATTCCCCGTGTTTGGTGC
CATAGTCTCTGACTACTGC



Homology of Contig U35_5773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g44470.11593e-89protein|actin-depolymerizing factor, putative, expressed
Brachypodium v1_2Bradi3g50967.11405e-90
Arabidopsis v10AT1G01750.11403e-74| Symbols: ADF11 | actin depolymerizing factor 11 | chr1:275528-276126 FORWARD LENGTH=140