barSeed - Barley Seed Development Database

Probe CUST_11252_PI390587928

Source Contig U35_5774

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11252_PI390587928	Hv_44K_v2	GGTGGAGGAGGAACATTTAAGAAGAACATCTTCAATGGTGATCTTCAAATTTCTTCAAAA	1073	GeneList: darkgreen MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.746	1.814	3.923	2.279	0.713	0.575
Raw	229.462	882.126	1654.137	1468.449	166.377	145.454

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24253.1	2178	9e-22	2124 - 2178	100	55 / 55	plus	ABC14132 ABC14133
JLOC1	JLOC1_16687.1	2161	2e-21	2108 - 2161	100	54 / 54	plus
Harvest21	ABC14133	496	3e-25	424 - 483	100	60 / 60	plus	ABC14133
Harvest35	U35_5774	1146	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1146 bp)

>U35_5774 1146 Hv_44K_v2
GAAGGAGGCCGTAGACGCCAACACCCTGCTGCACTACACCAACGTCTTCGACGCCGTCGT
CGACGCCGCCTACTTCGCCATGGCGTACCTCAACGTCACCAACGTGCCGGTCATGGTGAC
AGAGACCGGGTGGCCGCACAAGGGCGACGCCTCCGCCGAGCCGGACGCCAACAACGACAA
CGCCGACACGTACAACAGCAACCTCATCCGGCACGTCATGAACGTCACCGGCACCCCGAA
GCACCCTGGGGTGGCCGTGCCGACCTTCATCTACGAGCTGTACGACGAGGACACCCGCCC
CGGGACGGCGTCCGAGAAGTACTGGGGCCTGTTCGACATGAACGGCATCCCGGCGTACGC
GCTGCACCTGACGGGCTCCGGCGTGCTGCTAGCCAACGACACGACGAACCAGACATACTG
CGTGGCGCGGGAGGGCGCGGACGAGAAGATGCTGCAGGCCGCGCTCGACTGGGCGTGTGG
CCCGGGGAAGGTGGACTGCTCTGTGCTGACGCAGGGGAAGCCGTGCTATGACCCGGACAC
CGTGGAGGATCATGCCACGTACGCGTTCAATGCCTACTACCATGGGATGGGGATGGGCTC
GGGGACGTGCTACTTCTCCGGAGTCGCCGTGATCACGACCACCGATCCGAGCCATGGATC
TTGTGTTTATGGTGGGAAGAACGGCAGCGCGTTGCTGAACGGAACCTCGCTGGCGCCGTC
GTCCAACTCCACCACGGACTCCGGCTCCTGGCGGGCAGCCGGCGACGTCAGGTCGTTCGT
CCGGATCGTCGTCACCGCGCTGCTCTTGAGCGCCGTCGCCCTGTTGTAGGATGTGAGTAG
TAGGAAGTCAGGCAGAGGCAGCAGAGTAGGGAAGCCGTGCTATTAGTGACGTGAGAGATT
CTTTTTTCGTTGTCAAGTAGAATTGGCCTCGGTGCTGTTGGGTGGCAAGTGTCTTTCCAA
ATGGAACGGGATGTGGTTATGTTGGCTCTTAAGATCCGAGCTCGTACTCTGGTATTGGTT
GGGAATTTGGGATTGTATTGGATGTTTGGATCATTGGATGGATGTCATCTGCTGGTGGAG
GAGGAACATTTAAGAAGAACATCTTCAATGGTGATCTTCAAATTTCTTCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_5774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12140.3	472	6e-161	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g69610.1	499	2e-164
Arabidopsis v10	AT2G01630.1	501	3e-108	O-Glycosyl hydrolases family 17 protein \| chr2:279541-281955 REVERSE LENGTH=501