barSeed - Barley Seed Development Database

Probe CUST_11250_PI390587928

Source Contig U35_5777

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11250_PI390587928	Hv_44K_v2	TAAAGAAAAAGAACAAAAGAGAGGATGAGCTGCTGAAAGCCAAAGCACATTCCAGCACGA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2453.2	2867	2e-23	2683 - 2740	100	58 / 58	minus	ABC07014
MLOC	MLOC_2453.1	2816	2e-23	2688 - 2745	100	58 / 58	minus	ABC07014
JLOC1	JLOC1_1471.1	3006	1e-23	177 - 234	100	58 / 58	plus
Harvest35	U35_5777	491	3e-25	17 - 76	100	60 / 60	plus

Contig Sequence (491 bp)

>U35_5777 491 Hv_44K_v2
TCGAGCACTGTTGGCCTAAAGAAAAAGAACAAAAGAGAGGATGAGCTGCTGAAAGCCAAA
GCACATTCCAGCACGAGCGCACGAGAGGGGGGAGCGGAGCGGCAAGAAAACCCAAACCAA
AAGCCCCCAGAACTCCGGATCCGCCTCCCGCATTGCTTCGAAGCCGCCAGATTCGGCCGA
ATCCGGCGCCTGCCCCGCCGGAGGGCCCCGGATCGACCGGCATTCCGGCCCCGTGCACGC
TCCAGCCCTGGTGGTGAGGCATGGGGACCTTCGGTGGCCAGTTCGAGGACTTCCATGCGG
ACGACCGGCGTGCGGAGGTGATAGATTGGCTGGGCGGGCTGCTGCCGGAGTTCGATTTAC
CGCTGGATTCTTCAGACGAGGAGCTGCGGGAGTACCTTATCGACGGAACGGCGCTGTGCT
ACACTGCGGACAAGCTCATGCCTGGTGTTCTTGAGGGTGTCTGGGGTGGCTATGCATCAG
ACCATCGGTCA

Homology of Contig U35_5777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None